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蛋白质中虚假的构象转变?

Spurious conformational transitions in proteins?

作者信息

Cooper A

出版信息

Proc Natl Acad Sci U S A. 1981 Jun;78(6):3551-3. doi: 10.1073/pnas.78.6.3551.

DOI:10.1073/pnas.78.6.3551
PMID:6115381
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC319607/
Abstract

Temperature-dependent dynamic processes in biological macromolecules can produce sharp and reversible transitions in spectroscopic properties that might be misinterpreted as evidence for thermally induced conformational changes. This provides a rational explanation for the paradoxical case of D-amino acid oxidase [D-amino-acid:oxygen oxidoreductase (deaminating), EC 1.4.3.3], for which a sharp fluorescence transition at 14 degrees C, not observed by sensitive calorimetry [Sturtevant, J. M. & Mateo, P. L. (1978) Proc. Natl. Acad. Sci. USA 75, 2584-2587], could be due to a dynamic quenching process of large activation energy, rather than a change in conformational state of the protein. Similar interpretations may be valid in other systems studied by experimental techniques that depend, directly or indirectly, on molecular relaxation processes.

摘要

生物大分子中与温度相关的动态过程可在光谱特性上产生尖锐且可逆的转变,而这些转变可能会被误解为热诱导构象变化的证据。这为D-氨基酸氧化酶[D-氨基酸:氧氧化还原酶(脱氨基),EC 1.4.3.3]这一矛盾案例提供了合理的解释,对于该酶,在14摄氏度时出现的尖锐荧光转变(灵敏量热法未观察到[斯特蒂文特,J. M. & 马特奥,P. L.(1978年)美国国家科学院院刊75,2584 - 2587])可能是由于具有大活化能的动态猝灭过程,而非蛋白质构象状态的改变。类似的解释可能适用于其他通过直接或间接依赖分子弛豫过程的实验技术所研究的系统。

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Spurious conformational transitions in proteins?蛋白质中虚假的构象转变?
Proc Natl Acad Sci U S A. 1981 Jun;78(6):3551-3. doi: 10.1073/pnas.78.6.3551.
2
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Quenching by acrylamide and temperature of a fluorescent probe attached to the active site of ribonuclease.
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本文引用的文献

1
Fluorescence energy transfer in the rapid-diffusion limit.快速扩散极限下的荧光能量转移
Proc Natl Acad Sci U S A. 1978 Dec;75(12):5746-50. doi: 10.1073/pnas.75.12.5746.
2
The causes of sharply bent or discontinuous Arrhenius plots for enzyme-catalysed reactions.酶催化反应中阿累尼乌斯曲线急剧弯曲或不连续的原因。
Eur J Biochem. 1980 Apr;105(2):211-5. doi: 10.1111/j.1432-1033.1980.tb04491.x.
3
A temperature-dependent conformational change in D-amino acid oxidase and its effect on catalysis.D-氨基酸氧化酶中与温度相关的构象变化及其对催化作用的影响。
J Biol Chem. 1966 May 25;241(10):2347-57.
4
Kinetics of reversible denaturation of trypsin in water and water--ethanol mixtures.胰蛋白酶在水和水 - 乙醇混合物中的可逆变性动力学。
Eur J Biochem. 1968 Dec;7(1):146-52. doi: 10.1111/j.1432-1033.1968.tb19585.x.
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[A simple temperature range method in the seconds to hours range and the reversible denaturation of chymotrypsin].
Eur J Biochem. 1968 Apr;4(3):373-7. doi: 10.1111/j.1432-1033.1968.tb00221.x.
6
Quenching of protein fluorescence by oxygen. Detection of structural fluctuations in proteins on the nanosecond time scale.氧对蛋白质荧光的猝灭。在纳秒时间尺度上检测蛋白质中的结构波动。
Biochemistry. 1973 Oct 9;12(21):4171-9. doi: 10.1021/bi00745a021.
7
Thermodynamic fluctuations in protein molecules.蛋白质分子中的热力学涨落。
Proc Natl Acad Sci U S A. 1976 Aug;73(8):2740-1. doi: 10.1073/pnas.73.8.2740.
8
Temperature-dependent X-ray diffraction as a probe of protein structural dynamics.温度依赖型X射线衍射作为蛋白质结构动力学的一种探测手段
Nature. 1979 Aug 16;280(5723):558-63. doi: 10.1038/280558a0.
9
Dynamics of folded proteins.折叠蛋白质的动力学
Nature. 1977 Jun 16;267(5612):585-90. doi: 10.1038/267585a0.
10
Subnanosecond motions of tryptophan residues in proteins.蛋白质中色氨酸残基的亚纳秒级运动。
Proc Natl Acad Sci U S A. 1979 Jan;76(1):56-60. doi: 10.1073/pnas.76.1.56.