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药物 - 二核苷酸复合物的动力学研究。

Kinetic studies of drug-dinucleotide complexes.

作者信息

Davanloo P, Crothers D M

出版信息

Biochemistry. 1976 Nov 30;15(24):5299-305. doi: 10.1021/bi00669a016.

DOI:10.1021/bi00669a016
PMID:63287
Abstract

Three classes of kinetic behavior are observed in the complexes of actinomycin or ethidium with deoxydinucleotides. First, the initial dinucleotide binding to form a 1:1 complex is a rapid bimolecular process, whose rate could be measured for combination of actinomycin with d(pTpG) d(pGpT), d(pGpA), d(pGpG) d(pCpGpG), and d(pCpG) andfor combination of ethidium with d(pGpC). Second, with one exception, all reactions in which a second dinucleotide is added to form a 2:1 dinucleotide-drug complex are limited by a first-order step at high concentration. This class includes the combination of actinomycin with all dinucleotides tested except d(pGpC), and the reaction of ethidium with nucleotides of complementary sequence pyrimidine-purine, such as d(pCpG). The final class is the special case of d(pGpC) interacting to form a 2:1 complex with actinomycin. Third-order kinetics is observed, with no evidence for a first-order, rate-limiting step.

摘要

在放线菌素或溴化乙锭与脱氧二核苷酸的复合物中观察到三类动力学行为。首先,最初的二核苷酸结合形成1:1复合物是一个快速的双分子过程,其速率可通过放线菌素与d(pTpG)、d(pGpT)、d(pGpA)、d(pGpG)、d(pCpGpG)和d(pCpG)的结合以及溴化乙锭与d(pGpC)的结合来测量。其次,除了一个例外,所有添加第二个二核苷酸以形成2:1二核苷酸-药物复合物的反应在高浓度下都受一级步骤限制。这一类包括放线菌素与除d(pGpC)之外的所有测试二核苷酸的结合,以及溴化乙锭与互补序列嘧啶-嘌呤核苷酸(如d(pCpG))的反应。最后一类是d(pGpC)与放线菌素相互作用形成2:1复合物的特殊情况。观察到三级动力学,没有一级限速步骤的证据。

相似文献

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Kinetic studies of drug-dinucleotide complexes.药物 - 二核苷酸复合物的动力学研究。
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2
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引用本文的文献

1
Photoaffinity approaches to determining the sequence selectivities of DNA-small molecule interactions: actinomycin D and ethidium.用于确定DNA-小分子相互作用序列选择性的光亲和方法:放线菌素D和溴化乙锭。
Nucleic Acids Res. 1995 Apr 11;23(7):1252-9. doi: 10.1093/nar/23.7.1252.
2
Calorimetric and spectroscopic investigation of drug--DNA interactions: II. Dipyrandium binding to poly d(AT).药物与DNA相互作用的量热法和光谱法研究:II. 双吡啶𬭩与聚d(AT)的结合
Nucleic Acids Res. 1983 Aug 25;11(16):5701-15. doi: 10.1093/nar/11.16.5701.
3
Actinomycin D-deoxynucleotide interactions: binding isotherms at the benzenoid and quinoid portions of the drug.
放线菌素D与脱氧核苷酸的相互作用:药物苯型和醌型部分的结合等温线
Proc Natl Acad Sci U S A. 1978 Oct;75(10):4729-33. doi: 10.1073/pnas.75.10.4729.
4
Sugar pucker geometries at the intercalation site of propidium diiodide into miniature RNA and DNA duplexes in solution.碘化丙啶嵌入溶液中微型RNA和DNA双链体插入位点处的糖环构象。
Proc Natl Acad Sci U S A. 1978 Jun;75(6):2553-7. doi: 10.1073/pnas.75.6.2553.
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Sequence specificity of mutagen-nucleic acid complexes in solution: intercalation and mutagen-base pair overlap geometries for proflavine binding to dC-dC-dG-dG and dG-dG-dC-dC self-complementary duplexes.溶液中诱变剂 - 核酸复合物的序列特异性:原黄素与dC - dC - dG - dG和dG - dG - dC - dC自互补双链体结合的嵌入和诱变剂 - 碱基对重叠几何结构
Proc Natl Acad Sci U S A. 1977 Jul;74(7):2624-8. doi: 10.1073/pnas.74.7.2624.