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盘基网柄菌小亚基核糖体RNA的二级结构

Secondary structure of the Dictyostelium discoideum small subunit ribosomal RNA.

作者信息

Olsen G J, McCarroll R, Sogin M L

出版信息

Nucleic Acids Res. 1983 Nov 25;11(22):8037-49. doi: 10.1093/nar/11.22.8037.

DOI:10.1093/nar/11.22.8037
PMID:6359065
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC326558/
Abstract

We have used comparative analyses of prokaryotic and eukaryotic small subunit ribosomal RNAs to deduce a secondary structure for the Dictyostelium discoideum 18S rRNA. Most of the duplex regions are evolutionarily conserved in all organisms. We have taken advantage of the variation to the D. discoideum sequence (relative to the yeast and frog 19S rRNAs) to identify additional helical regions which are common to the eukaryotic 18S rRNAs.

摘要

我们利用原核生物和真核生物小亚基核糖体RNA的比较分析，推断出盘基网柄菌18S rRNA的二级结构。大多数双链区在所有生物中都是进化保守的。我们利用盘基网柄菌序列（相对于酵母和青蛙的19S rRNAs）的变异，来识别真核生物18S rRNAs共有的其他螺旋区域。

相似文献

1
Secondary structure of the Dictyostelium discoideum small subunit ribosomal RNA.盘基网柄菌小亚基核糖体RNA的二级结构
Nucleic Acids Res. 1983 Nov 25;11(22):8037-49. doi: 10.1093/nar/11.22.8037.
2
Phylogenetic relationships among eukaryotic kingdoms inferred from ribosomal RNA sequences.基于核糖体RNA序列推断的真核生物界之间的系统发育关系。
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3
Nucleotide sequence of Dictyostelium discoideum 5.8S ribosomal ribonucleic acid: evolutionary and secondary structural implications.盘基网柄菌5.8S核糖体核糖核酸的核苷酸序列：进化及二级结构意义
Biochemistry. 1982 May 11;21(10):2335-43. doi: 10.1021/bi00539a010.
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Nucleotide sequence of the Physarum polycephalum small subunit ribosomal RNA as inferred from the gene sequence: secondary structure and evolutionary implications.从基因序列推断出的多头绒泡菌小亚基核糖体RNA的核苷酸序列：二级结构及其进化意义
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引用本文的文献

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Single-Strand Conformation Polymorphism Fingerprint Method for Dictyostelids.盘基网柄菌的单链构象多态性指纹图谱法
Front Microbiol. 2021 Aug 27;12:708685. doi: 10.3389/fmicb.2021.708685. eCollection 2021.
2
Dinoflagellate 17S rRNA sequence inferred from the gene sequence: Evolutionary implications.从基因序列推断出的甲藻 17S rRNA 序列：进化意义。
Proc Natl Acad Sci U S A. 1986 Nov;83(22):8644-8. doi: 10.1073/pnas.83.22.8644.
3
Multiple spacer sequences in the nuclear large subunit ribosomal RNA gene of Crithidia fasciculata.法菲毛滴虫核大亚基核糖体 RNA 基因中的多个间隔序列。
EMBO J. 1987 Apr;6(4):1063-71. doi: 10.1002/j.1460-2075.1987.tb04859.x.
4
Consensus phylogeny of Dictyostelium.盘基网柄菌的一致性系统发育
Experientia. 1995 Dec 18;51(12):1110-5. doi: 10.1007/BF01944728.
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Nucleotide sequence of a crustacean 18S ribosomal RNA gene and secondary structure of eukaryotic small subunit ribosomal RNAs.一种甲壳类动物18S核糖体RNA基因的核苷酸序列及真核生物小亚基核糖体RNA的二级结构
Nucleic Acids Res. 1984 Dec 11;12(23):8749-68. doi: 10.1093/nar/12.23.8749.
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Xenopus laevis 18S ribosomal RNA: experimental determination of secondary structural elements, and locations of methyl groups in the secondary structure model.非洲爪蟾18S核糖体RNA：二级结构元件的实验测定以及二级结构模型中甲基的位置
Nucleic Acids Res. 1984 Mar 26;12(6):2649-67. doi: 10.1093/nar/12.6.2649.
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The complete nucleotide sequence of a rice 17S rRNA gene.水稻17S核糖体RNA基因的完整核苷酸序列。
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本文引用的文献

1
Sequence of the 16S Ribosomal RNA from Halobacterium volcanii, an Archaebacterium.古生菌嗜盐菌 16S 核糖体 RNA 序列。
Science. 1983 Aug 12;221(4611):656-9. doi: 10.1126/science.221.4611.656.
2
Modification of 18 S rRNA in the 40 S ribosomal subunit of yeast with dimethyl sulfate.用硫酸二甲酯对酵母40S核糖体亚基中的18S rRNA进行修饰。
FEBS Lett. 1981 Nov 2;134(1):11-4. doi: 10.1016/0014-5793(81)80539-x.
3
The nucleotide sequence of 5S rRNA from a cellular slime mold Dictyostelium discoideum.来自细胞黏菌盘基网柄菌的5S核糖体RNA的核苷酸序列。
Nucleic Acids Res. 1980 Dec 11;8(23):5535-9. doi: 10.1093/nar/8.23.5535.
4
Chemical modification studies and the secondary structure of HeLa cell 5.8S rRNA.海拉细胞5.8S核糖体RNA的化学修饰研究及其二级结构
Nucleic Acids Res. 1980 Oct 10;8(19):4521-34. doi: 10.1093/nar/8.19.4521.
5
Precise localization and nucleotide sequence of the two mouse mitochondrial rRNA genes and three immediately adjacent novel tRNA genes.两个小鼠线粒体rRNA基因以及三个紧邻的新tRNA基因的精确定位和核苷酸序列。
Cell. 1980 Nov;22(1 Pt 1):157-70. doi: 10.1016/0092-8674(80)90164-6.
6
Comparative sequence analysis as an approach to evaluating structure, function, and evolution of 5S and 5.8S ribosomal RNAs.比较序列分析作为评估5S和5.8S核糖体RNA的结构、功能及进化的一种方法。
Can J Biochem. 1982 Apr;60(4):480-9. doi: 10.1139/o82-057.
7
The sequence of the 5.8 S ribosomal RNA of the crustacean Artemia salina. With a proposal for a general secondary structure model for 5.8 S ribosomal RNA.卤虫5.8S核糖体RNA的序列。并提出了5.8S核糖体RNA的通用二级结构模型。
Nucleic Acids Res. 1982 Jun 11;10(11):3517-30. doi: 10.1093/nar/10.11.3517.
8
Nucleotide sequence of Dictyostelium discoideum 5.8S ribosomal ribonucleic acid: evolutionary and secondary structural implications.盘基网柄菌5.8S核糖体核糖核酸的核苷酸序列：进化及二级结构意义
Biochemistry. 1982 May 11;21(10):2335-43. doi: 10.1021/bi00539a010.
9
Enzymatic and chemical structure mapping of mouse 28S ribosomal ribonucleic acid contacts in 5.8S ribosomal ribonucleic acid.小鼠28S核糖体核糖核酸与5.8S核糖体核糖核酸接触的酶促和化学结构图谱
Biochemistry. 1982 May 11;21(10):2320-9. doi: 10.1021/bi00539a008.
10
Evolution of rRNA and origin of mitochondria.核糖体RNA的进化与线粒体的起源
Nature. 1981 Oct 29;293(5835):751-5. doi: 10.1038/293751a0.