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作为Cot参数的DNA浓度(Co)和孵育时间(t)是否会影响DNA双链体的热稳定性?

Does the concentration of DNA (Co) and the time of incubation (t) as parameters of Cot influence the thermal stability of the DNA duplexes?

作者信息

Bachvarov D R, Ivanov I G, Markov G G

出版信息

Mol Biol Rep. 1984 Jan;9(4):223-6. doi: 10.1007/BF00775351.

DOI:10.1007/BF00775351
PMID:6708947
Abstract

It has been shown in a previous paper (8) that the prime product of reassociation of related DNA sequences under open experimental conditions are mismatched duplexes which undergo 'maturation' upon further incubation. Due to this feature, the Tm value of the duplexes of a large number of DNAs is strongly dependent on the Cot value. Here we present data showing that the Tm of the duplexes of such type of DNAs depends also on the concentration of DNA in the range of one and the same Cot value. The significance of this finding in studying the taxonomic relationship by DNA-DNA hybridisation is discussed.

摘要

在之前的一篇论文(8)中已经表明,在开放实验条件下相关DNA序列重新缔合的主要产物是错配双链体,其在进一步孵育时会经历“成熟”。由于这一特性,大量DNA双链体的解链温度(Tm值)强烈依赖于Cot值。在此,我们给出的数据表明,在相同的Cot值范围内,这类DNA双链体的Tm值也取决于DNA的浓度。本文讨论了这一发现对于通过DNA-DNA杂交研究分类学关系的意义。

相似文献

1
Does the concentration of DNA (Co) and the time of incubation (t) as parameters of Cot influence the thermal stability of the DNA duplexes?作为Cot参数的DNA浓度(Co)和孵育时间(t)是否会影响DNA双链体的热稳定性?
Mol Biol Rep. 1984 Jan;9(4):223-6. doi: 10.1007/BF00775351.
2
"Maturation" of DNA duplexes.DNA双链的“成熟”
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Repetitive DNA in three Gramineae species with low DNA content.三种低DNA含量禾本科植物中的重复DNA
Hoppe Seylers Z Physiol Chem. 1980 Aug;361(8):1223-33. doi: 10.1515/bchm2.1980.361.2.1223.
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Denaturation and reassociation properties of the genome of Phaseolus vulgaris.
Hoppe Seylers Z Physiol Chem. 1980 Jul;361(7):1041-8. doi: 10.1515/bchm2.1980.361.2.1041.
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The relationship between mismatched base pairs and the thermal stability of DNA duplexes. I. Effects of depurination and chain scission.错配碱基对与DNA双链体热稳定性之间的关系。I. 脱嘌呤和链断裂的影响。
Biochim Biophys Acta. 1973 Feb 4;294(1):405-15. doi: 10.1016/0005-2787(73)90095-6.
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Analysis of the genome of plants. II. Characterization of repetitive DNA in barley (Hordeum vulgare) and wheat (Triticum aestivum).植物基因组分析。II. 大麦(Hordeum vulgare)和小麦(Triticum aestivum)中重复DNA的特征分析。
Biochim Biophys Acta. 1976 Feb 18;425(1):30-40. doi: 10.1016/0005-2787(76)90213-6.
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Polyacrylamide gel as a medium for DNA dissociation and reassociation.
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Exploration of long and short repetitive sequence relationships in the sea urchin genome.海胆基因组中长短重复序列关系的探索。
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[Peculiarities of the reassociation kinetics of fast repeating sequences of thermolabile fractions of hepatoma Zaidel DNA].
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本文引用的文献

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Related single copy sequences in the human genome.人类基因组中的相关单拷贝序列。
Biochim Biophys Acta. 1980 Oct 17;609(3):349-63. doi: 10.1016/0005-2787(80)90109-4.
2
Intragenomic DNA sequence homologies in the chicken and other members of the class Aves: DNA re-association under reduced stringency conditions.鸡及鸟类其他成员基因组内的DNA序列同源性:在降低严谨性条件下的DNA重缔合
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6
Analysis of repeating DNA sequences by reassociation.通过重缔合分析重复DNA序列。
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7
Hydroxyapatite column chromatography in procedures for isolation of purified DNA.用于分离纯化DNA的方法中的羟基磷灰石柱色谱法。
Anal Biochem. 1974 Jun;59(2):555-63. doi: 10.1016/0003-2697(74)90309-1.
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Significance of nucleic acid hybridization to systematics of antinomycetes.
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9
On the heterogeneity of the slow reassociating ("unique") DNA.关于缓慢复性(“单一”)DNA的异质性
Mol Cell Biochem. 1978 Jun 28;20(2):111-8. doi: 10.1007/BF00241389.
10
"Maturation" of DNA duplexes.DNA双链的“成熟”
Mol Biol Rep. 1978 Jun 16;4(2):67-71. doi: 10.1007/BF00775962.