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聚(dA-dT)在溶液中具有右手B构象:二维核磁共振研究。

Poly(dA-dT) has a right-handed B conformation in solution: a two-dimensional NMR study.

作者信息

Assa-Munt N, Kearns D R

出版信息

Biochemistry. 1984 Feb 28;23(5):791-6. doi: 10.1021/bi00300a001.

DOI:10.1021/bi00300a001
PMID:6712923
Abstract

The structure of poly(dA-dT) molecules in solution has been probed by using two-dimensional nuclear Overhauser effect spectroscopy. Cross-relaxation patterns arising from internucleotide and intranucleotide interactions are used to assign the sugar proton resonances and to deduce various structural features. The numerous proton-proton interactions that are observed indicate that poly(dA-dT) is a right-handed helix with a B-type conformation. Both the adenine and thymine nucleotides are in an anti conformation. Although slight differences in the purine-sugar and pyrimidine-sugar intranucleotide interactions are observed, the large differences in the sugar pucker of the adenine vs. thymine nucleotide suggested by some models [Klug, A., Jack, A., Viswamitra, M. A., Kennard, O., Shakked, Z., & Steitz, T. A. (1979) J. Mol. Biol. 131, 669-680] are not evident in the solution structure of poly(dA-dT). In the low-temperature spectra there is unexpected evidence for cross-strand AH2-AH2 interactions.

摘要

通过使用二维核Overhauser效应光谱对溶液中聚(dA-dT)分子的结构进行了探测。由核苷酸间和核苷酸内相互作用产生的交叉弛豫模式用于确定糖质子共振并推断各种结构特征。观察到的大量质子-质子相互作用表明聚(dA-dT)是具有B型构象的右手螺旋。腺嘌呤和胸腺嘧啶核苷酸均处于反式构象。尽管观察到嘌呤-糖和嘧啶-糖核苷酸内相互作用存在细微差异,但一些模型[Klug, A., Jack, A., Viswamitra, M. A., Kennard, O., Shakked, Z., & Steitz, T. A. (1979) J. Mol. Biol. 131, 669-680]所暗示的腺嘌呤与胸腺嘧啶核苷酸糖环构象的巨大差异在聚(dA-dT)的溶液结构中并不明显。在低温光谱中,存在链间AH2-AH2相互作用的意外证据。

相似文献

1
Poly(dA-dT) has a right-handed B conformation in solution: a two-dimensional NMR study.聚(dA-dT)在溶液中具有右手B构象:二维核磁共振研究。
Biochemistry. 1984 Feb 28;23(5):791-6. doi: 10.1021/bi00300a001.
2
1H two-dimensional nuclear Overhauser effect and relaxation studies of poly(dA).poly(dT).聚(dA)·聚(dT)的1H二维核Overhauser效应及弛豫研究
Biochemistry. 1986 Jun 3;25(11):3335-46. doi: 10.1021/bi00359a037.
3
Solution structure of poly(dA-dT).poly(dA-dT) in low and high salt: a 500 MHz 1H NMR study using one-dimensional NOE.聚(dA-dT)·聚(dA-dT)在低盐和高盐条件下的溶液结构:一项使用一维核Overhauser效应的500兆赫质子核磁共振研究。
J Biomol Struct Dyn. 1984 Jun;1(6):1423-55. doi: 10.1080/07391102.1984.10507529.
4
Conformational variability of poly(dA-dT).poly(dA-dT) and some other deoxyribonucleic acids includes a novel type of double helix.聚(dA-dT)·聚(dA-dT)及其他一些脱氧核糖核酸的构象变异性包括一种新型双螺旋结构。
J Biomol Struct Dyn. 1985 Aug;3(1):67-83. doi: 10.1080/07391102.1985.10508399.
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Poly(dA-dT).poly(dA-dT) in low salt appears to be a left-handed B-helix combined use of chemical theory, fiber diffraction and NMR spectroscopy.低盐状态下的聚(dA-dT)·聚(dA-dT)似乎是一种左旋B型螺旋,它综合运用了化学理论、纤维衍射和核磁共振光谱学。
J Biomol Struct Dyn. 1983 Oct;1(2):395-416. doi: 10.1080/07391102.1983.10507450.
6
Right-handed alternating DNA conformation: poly(dA-dT) adopts the same dinucleotide repeat with cesium, tetraalkylammonium, and 3 alpha, 5 beta, 17 beta-dipyrrolidinium steroid dimethiodide cations in aqueous solution.右手交替DNA构象:在水溶液中,聚(dA-dT)与铯、四烷基铵和3α,5β,17β-二吡咯烷鎓甾体二甲碘化物阳离子采用相同的二核苷酸重复序列。
Proc Natl Acad Sci U S A. 1981 Jul;78(7):4063-7. doi: 10.1073/pnas.78.7.4063.
7
Untenability of the heteronomous DNA model for poly(dA).poly(dT) in solution. This DNA adopts a right-handed B-DNA duplex in which the two strands are conformationally equivalent. A 500 MHz NMR study using one dimensional NOE.溶液中聚(dA)·聚(dT)的异源DNA模型的不可行性。这种DNA采用右手B-DNA双链体,其中两条链在构象上是等效的。一项使用一维核Overhauser效应的500兆赫核磁共振研究。
J Biomol Struct Dyn. 1985 Jun;2(6):1057-84. doi: 10.1080/07391102.1985.10507624.
8
DNA with adenine tracts contains poly(dA).poly(dT) conformational features in solution.含有腺嘌呤序列的DNA在溶液中具有聚(dA)·聚(dT)的构象特征。
Nucleic Acids Res. 1990 Mar 25;18(6):1559-64. doi: 10.1093/nar/18.6.1559.
9
Structure of poly(dA).poly(dT) is not identical to the AT rich regions of the single crystal structure of CGCGAATTBrCGCG. The consequence of this to netropsin binding to poly(dA).poly(dT).聚(dA)·聚(dT)的结构与CGCGAATTBrCGCG单晶结构中富含AT的区域并不相同。这对于纺锤菌素与聚(dA)·聚(dT)结合的影响。
J Biomol Struct Dyn. 1985 Dec;3(3):433-6. doi: 10.1080/07391102.1985.10508432.
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Investigations on the dynamic structures of adenine- and thymine-containing DNA.含腺嘌呤和胸腺嘧啶的DNA动态结构研究。
J Mol Biol. 1992 Jan 20;223(2):455-76. doi: 10.1016/0022-2836(92)90664-6.

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