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受限旋转扩散加跳跃对蛋白质中芳香环运动的核磁共振和荧光探针的联合效应。

Combined effect of restricted rotational diffusion plus jumps on nuclear magnetic resonance and fluorescence probes of aromatic ring motions in proteins.

作者信息

Levy R M, Sheridan R P

出版信息

Biophys J. 1983 Feb;41(2):217-21. doi: 10.1016/S0006-3495(83)84422-1.

DOI:10.1016/S0006-3495(83)84422-1
PMID:6838964
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1329169/
Abstract

A simple model is presented for the motion of phenylalanine and tyrosine rings in proteins. The model consists of restricted rotational diffusion of the rings about the side chain C alpha--C beta (chi 1) and C beta--C gamma (chi 2) axes combined with 180 degree ring flips. The model is used to evaluate order parameters for nuclear magnetic resonance relaxation and fluorescence depolarization probes of aromatic ring motions in proteins. The dependence of the order parameters on orientation in the ring plane is examined and it is demonstrated that in the presence of ring flips, additional ring librations can have a large effect on the probe order parameters.

摘要

本文提出了一个关于蛋白质中苯丙氨酸和酪氨酸环运动的简单模型。该模型由环围绕侧链Cα-Cβ(χ1)和Cβ-Cγ(χ2)轴的受限旋转扩散与180度的环翻转组合而成。该模型用于评估蛋白质中芳香环运动的核磁共振弛豫和荧光去极化探针的序参量。研究了序参量对环平面中取向的依赖性,并证明在存在环翻转的情况下,额外的环摆动会对探针序参量产生很大影响。

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本文引用的文献

1
Nanosecond segmental mobilities of tryptophan residues in proteins observed by lifetime-resolved fluorescence anisotropies.通过寿命分辨荧光各向异性观察蛋白质中色氨酸残基的纳秒级片段迁移率。
Biophys J. 1980 Oct;32(1):591-601. doi: 10.1016/S0006-3495(80)84992-7.
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Protein dynamics by solid-state NMR: aromatic rings of the coat protein in fd bacteriophage.通过固态核磁共振研究蛋白质动力学:fd噬菌体外壳蛋白的芳香环
Proc Natl Acad Sci U S A. 1982 Jan;79(1):101-5. doi: 10.1073/pnas.79.1.101.
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Dipolar NMR relaxation of nonprotonated aromatic carbons in proteins. Structural and dynamical effects.蛋白质中非质子化芳香族碳的偶极核磁共振弛豫。结构和动力学效应。
Biophys J. 1982 Jul;39(1):107-13. doi: 10.1016/S0006-3495(82)84496-2.
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Picosecond dynamics of tyrosine side chains in proteins.蛋白质中酪氨酸侧链的皮秒动力学
Biochemistry. 1979 Mar 20;18(6):927-42. doi: 10.1021/bi00573a001.
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Subnanosecond motions of tryptophan residues in proteins.蛋白质中色氨酸残基的亚纳秒级运动。
Proc Natl Acad Sci U S A. 1979 Jan;76(1):56-60. doi: 10.1073/pnas.76.1.56.
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Temperature dependent molecular motion of a tyrosine residue of ferrocytochrome C.亚铁细胞色素C酪氨酸残基的温度依赖性分子运动
FEBS Lett. 1976 Nov;70(1):96-100. doi: 10.1016/0014-5793(76)80734-x.
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Dynamics of the aromatic amino acid residues in the globular conformation of the basic pancreatic trypsin inhibitor (BPTI). I. 1H NMR studies.碱性胰蛋白酶抑制剂(BPTI)球状构象中芳香族氨基酸残基的动力学。I. 1H核磁共振研究。
Biophys Struct Mech. 1976 Aug 23;2(2):139-58. doi: 10.1007/BF00863706.