Institute of Physics, Biophysics, Martin-Luther-University Halle-Wittenberg, 06120, Halle (Saale), Germany.
J Biomol NMR. 2020 Mar;74(2-3):183-191. doi: 10.1007/s10858-020-00303-3. Epub 2020 Feb 3.
Ring flips of phenylalanine and tyrosine are a hallmark of protein dynamics. They report on transient breathing motions of proteins. In addition, flip rates also depend on stabilizing interactions in the ground state, like aromatic stacking or cation-π interaction. So far, experimental studies of ring flips have almost exclusively been performed on aromatic rings without stabilizing interactions. Here we investigate ring flip dynamics of Phe and Tyr in the aromatic cluster in GB1. We found that all four residues of the cluster, Y3, F30, Y45 and F52, display slow ring flips. Interestingly, F52, the central residue of the cluster, which makes aromatic contacts with all three others, is flipping significantly faster, while the other rings are flipping with the same rates within margin of error. Determined activation enthalpies and activation volumes of these processes are in the same range of other reported ring flips of single aromatic rings. There is no correlation of the number of aromatic stacking interactions to the activation enthalpy, and no correlation of the ring's extent of burying to the activation volume. Because of these findings, we speculate that F52 is undergoing concerted ring flips with each of the other rings.
苯丙氨酸和酪氨酸的环翻转是蛋白质动力学的一个标志。它们反映了蛋白质的瞬态呼吸运动。此外,翻转速率还取决于基态中的稳定相互作用,如芳香堆积或阳离子-π 相互作用。到目前为止,关于环翻转的实验研究几乎只在没有稳定相互作用的芳香环上进行。在这里,我们研究了 GB1 中芳香簇中的苯丙氨酸和酪氨酸的环翻转动力学。我们发现,该簇的所有四个残基,Y3、F30、Y45 和 F52,都显示出缓慢的环翻转。有趣的是,F52 是该簇的中心残基,与其他三个残基都有芳香接触,它的翻转速度明显更快,而其他环的翻转速度在误差范围内相同。这些过程的确定活化焓和活化体积与其他报道的单个芳香环的环翻转处于相同范围。芳香堆积相互作用的数量与活化焓之间没有相关性,环的埋藏程度与活化体积之间也没有相关性。基于这些发现,我们推测 F52 与其他每个环都在协同进行环翻转。