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系谱判别分析:一种识别单基因分离的方法。

Pedigree discriminant analysis: a method to identify monogenic segregation.

作者信息

Zlotnik L H, Elston R C, Namboodiri K K

出版信息

Am J Med Genet. 1983 Jun;15(2):307-13. doi: 10.1002/ajmg.1320150214.

DOI:10.1002/ajmg.1320150214
PMID:6881202
Abstract

We describe a method for obtaining a linear discriminant function to identify monogenic segregation in multivariate pedigree data. It differs from Fisher's linear discriminant function in that it does not assume that the genotype of each individual in the pedigree already known. The method consists of finding that linear function of the variables that maximizes the likelihood of a set of pedigree data, under the hypothesis of single gene segregation, subject to the constraint that the total sample variance of the function remains constant. To simplify the computation the variables are first transformed to their standardized principal components. Reanalysis of a set of pedigree data suggests that age and powers of age should be considered as extra variables from which the principal components are obtained, and virtually all of the variance should be accounted for by the principal components used to obtain the discriminant function.

摘要

我们描述了一种用于获得线性判别函数以识别多变量家系数据中单基因分离的方法。它与费希尔线性判别函数的不同之处在于,它不假定家系中每个个体的基因型已知。该方法包括在单基因分离的假设下,找到变量的线性函数,该函数在函数的总样本方差保持恒定的约束下,使一组家系数据的似然性最大化。为了简化计算,首先将变量转换为其标准化主成分。对一组家系数据的重新分析表明,年龄和年龄的幂应被视为从中获取主成分的额外变量,并且几乎所有的方差都应由用于获得判别函数的主成分来解释。

相似文献

1
Pedigree discriminant analysis: a method to identify monogenic segregation.系谱判别分析:一种识别单基因分离的方法。
Am J Med Genet. 1983 Jun;15(2):307-13. doi: 10.1002/ajmg.1320150214.
2
[Verification of a monogenic hypothesis on pedigrees with an arbitrary structure selected for proband. I. Alternative trait].[对为先证者选择的具有任意结构的家系进行单基因假说验证。I. 替代性状]
Genetika. 1986 Mar;22(3):413-22.
3
[Testing of a monogenic hypothesis in pedigrees of an arbitrary structure selected for a proband. III. Quantitative traits].[针对先证者选择的任意结构家系中单一基因假说的检验。III. 数量性状]
Genetika. 1986 Apr;22(4):599-608.
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Counting methods (EM algorithm) in human pedigree analysis: linkage and segregation analysis.人类谱系分析中的计数方法(期望最大化算法):连锁与分离分析
Ann Hum Genet. 1977 May;40(4):443-54.
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[Verification of a monogenic hypothesis on pedigrees with an arbitrary structure selected for proband. II. The problem of prognosis].[对为先证者选择的具有任意结构的家系的单基因假说的验证。II. 预后问题]
Genetika. 1986 Mar;22(3):423-33.
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Multivariate and multilocus variance components method, based on structural relationships to assess quantitative trait linkage via SEGPATH.基于结构关系通过SEGPATH评估数量性状连锁的多变量和多位点方差成分法。
Genet Epidemiol. 2003 Feb;24(2):128-38. doi: 10.1002/gepi.10208.
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Somatic allele loss in genetic linkage analysis of cancer.癌症基因连锁分析中的体细胞等位基因缺失
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Search for major genetic effects through linkage and association.通过连锁分析和关联研究寻找主要基因效应。
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Estimation of genotype error rate using samples with pedigree information--an application on the GeneChip Mapping 10K array.利用系谱信息样本估计基因型错误率——在基因芯片Mapping 10K阵列上的应用
Genomics. 2004 Oct;84(4):623-30. doi: 10.1016/j.ygeno.2004.05.003.
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[Algorithm for calculating the probabilities of the identity of genes by descent in arbitrary pedigrees].[用于计算任意系谱中基因同源身份概率的算法]
Genetika. 1983 Apr;19(4):670-8.

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Use of the robust sib-pair method to screen for single-locus, multiple-locus, and pleiotropic effects: application to traits related to hypertension.
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