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核糖体中密码子与反密码子相互作用的机制。分离的30S亚基含有两个用于转运RNA的密码子特异性结合位点的直接功能证据。

Mechanism of codon-anticodon interaction in ribosomes. Direct functional evidence that isolated 30S subunits contain two codon-specific binding sites for transfer RNA.

作者信息

Kirillov S V, Makhno V I, Semenkov Y P

出版信息

Nucleic Acids Res. 1980 Jan 11;8(1):183-96. doi: 10.1093/nar/8.1.183.

DOI:10.1093/nar/8.1.183
PMID:6986612
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC327251/
Abstract

30S subunits were isolated capable to bind simultaneously two molecules of Phe-tRNAPhe (or N-Acetyl-Phe-tRNAPhe), both poly(U) dependent. The site with higher affinity to tRNA was identified as P site. tRNA binding to this site was not inhibited by low concentrations of tetracycline (2 x 10(-5)M) and, on the other hand, N-Acetyl-Phe-tRNAPhe, initially prebound to the 30S.poly(U) complex in the presence of tetracycline, reacted with puromycin quantitatively after addition of 50S subunits. The site with lower affinity to tRNA revealed features of the A site: tetracycline fully inhibited the binding of both Phe-tRNAPhe and N-Acetyl-Phe-tRNAPhe. Binding of two molecules of Phe-tRNAPhe to the 30S.poly(U) complex followed by the addition of 50S subunits resulted in the formation of (Phe)2-tRNAPhe in 75-90% of the reassociated 70S ribosomes. These results prove that isolated 30S subunits contain two physically distinct centers for the binding of specific aminoacyl- (or peptidyl-) tRNA. Addition of 50S subunits results in the formation of whole 70S ribosomes with usual donor and acceptor sites.

摘要

分离出的30S亚基能够同时结合两个苯丙氨酰 - tRNAphe(或N - 乙酰 - 苯丙氨酰 - tRNAphe)分子,二者均依赖于聚尿苷酸。对tRNA具有较高亲和力的位点被鉴定为P位点。低浓度的四环素(2×10⁻⁵M)不会抑制tRNA与该位点的结合,另一方面,在四环素存在下最初预结合到30S·聚尿苷酸复合物上的N - 乙酰 - 苯丙氨酰 - tRNAphe,在加入50S亚基后与嘌呤霉素发生定量反应。对tRNA具有较低亲和力的位点显示出A位点的特征:四环素完全抑制苯丙氨酰 - tRNAphe和N - 乙酰 - 苯丙氨酰 - tRNAphe的结合。两个苯丙氨酰 - tRNAphe分子与30S·聚尿苷酸复合物结合,随后加入50S亚基,在75 - 90%重新结合的70S核糖体中形成了(苯丙氨酸)₂ - tRNAphe。这些结果证明,分离出的30S亚基包含两个物理上不同的特异性氨酰 - (或肽酰 - )tRNA结合中心。加入50S亚基会导致形成具有通常供体位点和受体位点的完整70S核糖体。

相似文献

1
Mechanism of codon-anticodon interaction in ribosomes. Direct functional evidence that isolated 30S subunits contain two codon-specific binding sites for transfer RNA.核糖体中密码子与反密码子相互作用的机制。分离的30S亚基含有两个用于转运RNA的密码子特异性结合位点的直接功能证据。
Nucleic Acids Res. 1980 Jan 11;8(1):183-96. doi: 10.1093/nar/8.1.183.
2
[Binding of the yeast phenylalanine tRNA with Escherichia coli ribosomes. Effect of the removal of a modified base from the 3'-end of the anticodon on codon-anticodon interaction].[酵母苯丙氨酸tRNA与大肠杆菌核糖体的结合。从反密码子3'-末端去除一个修饰碱基对密码子-反密码子相互作用的影响]
Mol Biol (Mosk). 1984 Nov-Dec;18(6):1486-96.
3
Mechanism of codon-anticodon interaction in ribosomes: comparative study of interaction of Phe-tRNAPhe and N-acetyl-Phe-tRNAPhe with the donor site of Escherichia coli ribosomes.核糖体中密码子-反密码子相互作用的机制:苯丙氨酰-tRNA苯丙氨酸和N-乙酰苯丙氨酰-tRNA苯丙氨酸与大肠杆菌核糖体供体位点相互作用的比较研究。
FEBS Lett. 1981 Mar 9;125(1):15-9. doi: 10.1016/0014-5793(81)80986-6.
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The mechanism of codon-anticodon interaction in ribosomes. Quantitative study of codon-dependent binding of tRNA to the 30-S ribosomal subunits of Escherichia coli.核糖体中密码子-反密码子相互作用的机制。tRNA与大肠杆菌30-S核糖体亚基的密码子依赖性结合的定量研究。
Eur J Biochem. 1978 Aug 15;89(1):297-304. doi: 10.1111/j.1432-1033.1978.tb20927.x.
5
Codon-anticodon interaction at the ribosomal E site.核糖体E位点上的密码子-反密码子相互作用。
J Biol Chem. 1986 Jul 15;261(20):9140-3.
6
Codon-anticodon interaction at the ribosomal P (peptidyl-tRNA)site.核糖体P(肽基-tRNA)位点的密码子-反密码子相互作用。
Proc Natl Acad Sci U S A. 1979 May;76(5):2143-7. doi: 10.1073/pnas.76.5.2143.
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Codon-anticodon interaction at the ribosomal P site improves the accuracy of the decoding process.核糖体P位点上的密码子-反密码子相互作用提高了解码过程的准确性。
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Three tRNA binding sites on Escherichia coli ribosomes.大肠杆菌核糖体上的三个tRNA结合位点。
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Mechanism of codon-anticodon interaction in ribosomes: codon-anticodon interaction of aminoacyl-tRNA at the ribosomal donor site.核糖体中密码子-反密码子相互作用的机制:氨酰tRNA在核糖体供体位点的密码子-反密码子相互作用。
FEBS Lett. 1980 Nov 3;120(2):221-4. doi: 10.1016/0014-5793(80)80302-4.
10
tRNA binding sites on the subunits of Escherichia coli ribosomes.大肠杆菌核糖体亚基上的转运RNA结合位点。
J Biol Chem. 1986 Nov 5;261(31):14506-14.

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EMBO J. 1983;2(5):799-804. doi: 10.1002/j.1460-2075.1983.tb01503.x.
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Mol Cell Biochem. 1984;61(1):63-81. doi: 10.1007/BF00239606.
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Ribosome-messenger recognition: mRNA target sites for ribosomal protein S1.核糖体-信使识别:核糖体蛋白S1的mRNA靶位点
Nucleic Acids Res. 1991 Jan 11;19(1):155-62. doi: 10.1093/nar/19.1.155.
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A proposed role for IF-3 and EF-T in maintaining the specificity of prokaryotic initiation complex formation.关于IF-3和EF-T在维持原核起始复合物形成特异性方面的一个推测作用。
Mol Biol Rep. 1991 Feb;15(1):33-8. doi: 10.1007/BF00369898.

本文引用的文献

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Initiation of protein synthesis II. A convenient assay for the ribosome-dependent synthesis of N-formyl-C14-methionylpuromycin.蛋白质合成的起始II。一种用于核糖体依赖性合成N-甲酰基-C14-甲硫氨酰嘌呤霉素的简便测定法。
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Studies on transfer ribonucleic acid-ribosome complexes. XIX. Effect of antibiotics on peptidyl puromycin synthesis on polyribosoms from Escherichia coli.转移核糖核酸-核糖体复合物的研究。十九。抗生素对大肠杆菌多核糖体上肽基嘌呤霉素合成的影响。
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Architecture of the Escherichia coli ribosome as determined by immune electron microscopy.通过免疫电子显微镜确定的大肠杆菌核糖体结构。
Proc Natl Acad Sci U S A. 1975 Dec;72(12):4820-4. doi: 10.1073/pnas.72.12.4820.
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Kinetic evidence for the obligatory formation of a 30S initiation complex in polyphenylalanine synthesis initiated with N-acetylphenylalanyl-5RNA.在由N-乙酰苯丙氨酰-5RNA起始的聚苯丙氨酸合成中30S起始复合物形成的必要性的动力学证据。
Biochemistry. 1975 Jul;14(13):2889-94. doi: 10.1021/bi00684a015.
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Ribosomal proteins S5, S11, S13 and S19 localized by electron microscopy of antibody-labeled subunits.
J Mol Biol. 1975 Dec 25;99(4):631-44. doi: 10.1016/s0022-2836(75)80177-x.
9
The mechanism of codon-anticodon interaction in ribosomes. Quantitative study of codon-dependent binding of tRNA to the 30-S ribosomal subunits of Escherichia coli.核糖体中密码子-反密码子相互作用的机制。tRNA与大肠杆菌30-S核糖体亚基的密码子依赖性结合的定量研究。
Eur J Biochem. 1978 Aug 15;89(1):297-304. doi: 10.1111/j.1432-1033.1978.tb20927.x.
10
Evidence that proteins S1, S11 and S21 directly participates in the binding of transfer RNA to the 30S ribosome.有证据表明蛋白质S1、S11和S21直接参与转运RNA与30S核糖体的结合。
Nucleic Acids Res. 1978 Mar;5(3):933-50. doi: 10.1093/nar/5.3.933.