从深海沉积物摄食者中恢复新型古菌rRNA序列并进行系统发育分析。
Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder.
作者信息
McInerney J O, Wilkinson M, Patching J W, Embley T M, Powell R
机构信息
Department of Microbiology, University College Galway, Ireland.
出版信息
Appl Environ Microbiol. 1995 Apr;61(4):1646-8. doi: 10.1128/aem.61.4.1646-1648.1995.
Abstract
In 1992, two independent reports based on small-subunit rRNA gene (SSU rDNA) cloning revealed the presence of novel Archaea among marine bacterioplankton. Here, we report the presence of further novel Archaea SSU rDNA sequences recovered from the midgut contents of a deep-sea marine holothurian. Phylogenetic analyses show that these abyssal Archaea are a paraphyletic component of a highly divergent clade that also includes some planktonic sequences. Our data confirm that this clade is a deep-branching lineage in the tree of life.
摘要
1992年，两项基于小亚基rRNA基因（SSU rDNA）克隆的独立报告显示，在海洋浮游细菌中存在新型古菌。在此，我们报告从一种深海海参的中肠内容物中 recovered（此处原文可能有误，推测是“回收”之类的意思，暂按“回收”翻译）到了更多新型古菌SSU rDNA序列。系统发育分析表明，这些深海古菌是一个高度分化的分支的并系组成部分，该分支还包括一些浮游序列。我们的数据证实，这个分支是生命之树中的一个深度分支谱系。
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本文引用的文献
1
Barophilic bacteria associated with digestive tracts of abyssal holothurians.与深海海参消化道相关的嗜压细菌。
Appl Environ Microbiol. 1982 Nov;44(5):1222-30. doi: 10.1128/aem.44.5.1222-1230.1982.
2
Ribosomal RNA: a key to phylogeny.核糖体RNA：系统发育的关键。
FASEB J. 1993 Jan;7(1):113-23. doi: 10.1096/fasebj.7.1.8422957.
3
High abundance of Archaea in Antarctic marine picoplankton.南极海洋微微型浮游生物中古菌的高丰度。
Nature. 1994 Oct 20;371(6499):695-7. doi: 10.1038/371695a0.
4
The neighbor-joining method: a new method for reconstructing phylogenetic trees.邻接法：一种重建系统发育树的新方法。
Mol Biol Evol. 1987 Jul;4(4):406-25. doi: 10.1093/oxfordjournals.molbev.a040454.
5
Genetic diversity in Sargasso Sea bacterioplankton.马尾藻海浮游细菌的遗传多样性。
Nature. 1990 May 3;345(6270):60-3. doi: 10.1038/345060a0.
6
The ribosomal RNA database project.核糖体RNA数据库项目。
Nucleic Acids Res. 1991 Apr 25;19 Suppl(Suppl):2017-21. doi: 10.1093/nar/19.suppl.2017.
7
Evidence that eukaryotes and eocyte prokaryotes are immediate relatives.真核生物和曙细菌原核生物是直系亲属的证据。
Science. 1992 Jul 3;257(5066):74-6. doi: 10.1126/science.1621096.
8
Archaea in coastal marine environments.沿海海洋环境中的古菌。
Proc Natl Acad Sci U S A. 1992 Jun 15;89(12):5685-9. doi: 10.1073/pnas.89.12.5685.
9
Novel major archaebacterial group from marine plankton.来自海洋浮游生物的新型主要古细菌类群。
Nature. 1992 Mar 12;356(6365):148-9. doi: 10.1038/356148a0.
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