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昆虫红摇蚊YWVZ/7B珠蛋白基因簇的分子进化分析

Molecular evolutionary analysis of the YWVZ/7B globin gene cluster of the insect Chironomus thummi.

作者信息

Trewitt P M, Luhm R A, Samad F, Ramakrishnan S, Kao W Y, Bergtrom G

机构信息

Department of Biological Sciences, University of Wisconsin-Milwaukee 53201, USA.

出版信息

J Mol Evol. 1995 Sep;41(3):313-28.

PMID:7563117
Abstract

We report the sequence of 8.1 kb of DNA containing the 3' end of one and seven other complete intronless globin genes from the YWVZ/7B locus of the dipteran Chironomus thummi thummi. One of these (ctt-v) appears to be a pseudogene by virtue of a premature termination codon, whereas the others encode apparently functional globin polypeptides. taken together with previously published data, the C. th. thummi YWVZ/7B locus codes for at least 11 globins, five of which differ from one another by no more than two amino acids. In contrast only nine globin genes are found in a comparable genomic clone isolated from C. th. piger. As indicated by sequence alignment, this difference in copy number can be attributed to a loss of one gene (fusion of globin genes 7B8 and 7B10) in the piger lines, coupled with a gain (globin gene 7B9) in the thummi lineage. Comparisons between the thummi and piger sequences showed that YWVZ/7B intergenic regions have maintained a level of 91% similarity since the thummi/piger divergence: most differences are simply due to single base substitutions or insertion/deletion events in either the thummi or the piger DNA, but three instances of partially overlapping deletions were also detected. A phylogenetic analysis of YWVZ/7B gene products was conducted, from which a plausible reconstruction of the evolutionary history of the locus was obtained. In addition, alignment of globin 7B amino acid sequences suggested that globin genes 7B2 and 7B3 (reported at the protein and cDNA level, respectively, but not contained on the C. th. thummi or C. th. piger genomic clones) are possibly chimeric genes. Given the trend toward expansion of the C. thummi globin gene family in general and of the globin 7B subfamily in particular, we propose that increased copy number of these genes has been positively selected as a mechanism to achieve a high Hb concentration in the larval hemolymph.

摘要

我们报道了来自双翅目昆虫嗜尸摇蚊(Chironomus thummi thummi)YWVZ/7B位点的一段8.1 kb的DNA序列,其中包含一个完整的无内含子珠蛋白基因的3'端以及其他七个完整的无内含子珠蛋白基因。其中一个基因(ctt-v)由于存在提前终止密码子,似乎是一个假基因,而其他基因则编码明显具有功能的珠蛋白多肽。结合先前发表的数据,嗜尸摇蚊YWVZ/7B位点编码至少11种珠蛋白,其中五种彼此之间的氨基酸差异不超过两个。相比之下,从嗜尸摇蚊(C. th. piger)分离出的一个可比基因组克隆中仅发现九个珠蛋白基因。序列比对表明,这种拷贝数的差异可归因于piger品系中一个基因(珠蛋白基因7B8和7B10的融合)的丢失,以及thummi谱系中的一个增加(珠蛋白基因7B9)。thummi和piger序列之间的比较表明,自thummi/piger分化以来,YWVZ/7B基因间区域保持了91%的相似性水平:大多数差异仅仅是由于thummi或piger DNA中的单碱基替换或插入/缺失事件,但也检测到了三个部分重叠缺失的实例。对YWVZ/7B基因产物进行了系统发育分析,从中获得了该位点进化历史的合理重建。此外,珠蛋白7B氨基酸序列的比对表明,珠蛋白基因7B2和7B3(分别在蛋白质和cDNA水平报道,但未包含在嗜尸摇蚊或嗜尸摇蚊piger基因组克隆中)可能是嵌合基因。鉴于嗜尸摇蚊珠蛋白基因家族总体上有扩张的趋势,特别是珠蛋白7B亚家族,我们提出这些基因拷贝数的增加已被正向选择,作为在幼虫血淋巴中实现高血红蛋白浓度的一种机制。

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Molecular evolutionary analysis of the YWVZ/7B globin gene cluster of the insect Chironomus thummi.昆虫红摇蚊YWVZ/7B珠蛋白基因簇的分子进化分析
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The histone H1 genes of the dipteran insect, Chironomus thummi, fall under two divergent classes and encode proteins with distinct intranuclear distribution and potentially different functions.双翅目昆虫图氏摇蚊的组蛋白H1基因分为两个不同的类别,编码的蛋白质具有不同的核内分布和潜在的不同功能。
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2
Genomic basis of ecological niche divergence among cryptic sister species of non-biting midges.隐种间无刺摇蚊生态位分化的基因组基础。
BMC Genomics. 2013 Jun 10;14:384. doi: 10.1186/1471-2164-14-384.
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Extracting protein alignment models from the sequence database.从序列数据库中提取蛋白质比对模型。

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Sequences of globin 6 gene alleles and linkage of globin 6 and 7B genes in the insect Chironomus thummi thummi.
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