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X射线吸收研究和同源性建模确定了决定锈蓝蛋白中铜位点性质的结构特征。

X-ray absorption studies and homology modeling define the structural features that specify the nature of the copper site in rusticyanin.

作者信息

Grossmann J G, Ingledew W J, Harvey I, Strange R W, Hasnain S S

机构信息

Molecular Biophysics Group, Daresbury Laboratory, Warrington, Cheshire, U.K.

出版信息

Biochemistry. 1995 Jul 4;34(26):8406-14. doi: 10.1021/bi00026a023.

DOI:10.1021/bi00026a023
PMID:7599131
Abstract

Rusticyanin, a blue copper protein, possessing the highest redox potential among this class of proteins and a high stability at acidic pH reveals homology with the C-terminal end of the other single copper containing blue proteins and an interesting homology to parts of the blue copper domain of the multi-copper proteins such as the nitrite reductases. Extended X-ray absorption fine structure (EXAFS) data at pH 2.0 reveal that Cu is ligated to two His and a Cys in the inner coordination sphere, similar to other blue copper centers. Modeling studies suggest that His85 is the ligating histidine from the N-terminal end. Its neighboring residue is a serine rather than the asparagine found in all known blue Cu proteins. The high stability of the copper site may arise in part due to this substitution. The Cu binding site is surrounded by aromatic residues which may provide further protection for the metal in an acidic environment. In addition, the high number of solvent-exposed uncompensated lysine residues is likely to be of functional relevance under low pH conditions. EXAFS data show a very small change (relative to azurin) in the copper site upon reduction, consistent with a more constrained copper center in rusticyanin compared to azurin and a higher redox potential.

摘要

乡村蓝蛋白是一种蓝色铜蛋白,在这类蛋白中具有最高的氧化还原电位,并且在酸性pH条件下具有高稳定性。它与其他含单铜蓝色蛋白的C末端存在同源性,并且与多铜蛋白(如亚硝酸还原酶)的蓝色铜结构域的部分区域存在有趣的同源性。在pH 2.0条件下的扩展X射线吸收精细结构(EXAFS)数据表明,铜在内层配位球中与两个组氨酸和一个半胱氨酸配位,这与其他蓝色铜中心类似。建模研究表明,His85是来自N末端的配位组氨酸。它的相邻残基是丝氨酸,而不是在所有已知蓝色铜蛋白中发现的天冬酰胺。铜位点的高稳定性可能部分归因于这种取代。铜结合位点被芳香族残基包围,这可能在酸性环境中为金属提供进一步的保护。此外,大量暴露于溶剂的未补偿赖氨酸残基在低pH条件下可能具有功能相关性。EXAFS数据表明,与天青蛋白相比,还原后铜位点的变化非常小(相对于天青蛋白),这与乡村蓝蛋白中铜中心比天青蛋白更受限制以及更高的氧化还原电位一致。

相似文献

1
X-ray absorption studies and homology modeling define the structural features that specify the nature of the copper site in rusticyanin.X射线吸收研究和同源性建模确定了决定锈蓝蛋白中铜位点性质的结构特征。
Biochemistry. 1995 Jul 4;34(26):8406-14. doi: 10.1021/bi00026a023.
2
Amino-acid sequence of rusticyanin from Thiobacillus ferrooxidans and its comparison with other blue copper proteins.氧化亚铁硫杆菌中rusticyanin的氨基酸序列及其与其他蓝铜蛋白的比较。
Biochim Biophys Acta. 1993 Mar 5;1162(1-2):28-34. doi: 10.1016/0167-4838(93)90123-9.
3
Structure of the M148Q mutant of rusticyanin at 1.5 A: a model for the copper site of stellacyanin.1.5埃分辨率下嗜铁素蓝蛋白M148Q突变体的结构:漆树蓝蛋白铜位点模型
Acta Crystallogr D Biol Crystallogr. 2001 Mar;57(Pt 3):355-60. doi: 10.1107/s0907444900019156.
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Crystal structures of the Met148Leu and Ser86Asp mutants of rusticyanin from Thiobacillus ferrooxidans: insights into the structural relationship with the cupredoxins and the multi copper proteins.氧化亚铁硫杆菌中rusticyanin的Met148Leu和Ser86Asp突变体的晶体结构:对与铜蓝蛋白和多铜蛋白结构关系的见解
J Mol Biol. 2002 Jul 5;320(2):263-75. doi: 10.1016/S0022-2836(02)00443-6.
5
Multiple wavelength anomalous diffraction (MAD) crystal structure of rusticyanin: a highly oxidizing cupredoxin with extreme acid stability.铁锈氧化还原蛋白的多波长反常衍射(MAD)晶体结构:一种具有极高酸稳定性的强氧化性铜蓝蛋白。
J Mol Biol. 1996 Nov 15;263(5):730-51. doi: 10.1006/jmbi.1996.0612.
6
Active site geometry in the high oxido-reduction potential rusticyanin from Thiobacillus ferrooxidans.氧化亚铁硫杆菌中高氧化还原电位锈铁氧化还原蛋白的活性位点几何结构。
Biochem Biophys Res Commun. 1994 Sep 30;203(3):1655-62. doi: 10.1006/bbrc.1994.2376.
7
Nuclear magnetic resonance 15N and 1H resonance assignments and global fold of rusticyanin. Insights into the ligation and acid stability of the blue copper site.核黄素的核磁共振15N和1H共振归属及整体折叠。对蓝铜位点配位和酸稳定性的深入了解。
J Mol Biol. 1994 Dec 9;244(4):370-84. doi: 10.1006/jmbi.1994.1737.
8
Gene synthesis, high-level expression, and mutagenesis of Thiobacillus ferrooxidans rusticyanin: His 85 is a ligand to the blue copper center.氧化亚铁硫杆菌蓝铜蛋白的基因合成、高水平表达及诱变:组氨酸85是蓝色铜中心的配体。
Biochemistry. 1995 May 23;34(20):6640-8. doi: 10.1021/bi00020a009.
9
Metal-ligand interplay in blue copper proteins studied by 1H NMR spectroscopy: Cu(II)-pseudoazurin and Cu(II)-rusticyanin.通过¹H NMR光谱研究蓝色铜蛋白中的金属-配体相互作用:Cu(II)-假天青蛋白和Cu(II)-锈色氧化还原蛋白。
J Am Chem Soc. 2002 Nov 20;124(46):13698-708. doi: 10.1021/ja0267019.
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EXAFS of the type-1 copper site of rusticyanin.
FEBS Lett. 1990 Aug 20;269(1):117-21. doi: 10.1016/0014-5793(90)81133-9.

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2
Protein design: toward functional metalloenzymes.蛋白质设计:迈向功能性金属酶
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Rationally tuning the reduction potential of a single cupredoxin beyond the natural range.合理调节单个铜蓝蛋白的还原电位使其超出自然范围。
Nature. 2009 Nov 5;462(7269):113-6. doi: 10.1038/nature08551.
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Low temperature 65Cu NMR spectroscopy of the Cu+ site in azurin.天青蛋白中Cu+位点的低温65Cu核磁共振光谱。
J Am Chem Soc. 2009 Oct 7;131(39):13992-9. doi: 10.1021/ja901308v.