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铁锈氧化还原蛋白的多波长反常衍射(MAD)晶体结构:一种具有极高酸稳定性的强氧化性铜蓝蛋白。

Multiple wavelength anomalous diffraction (MAD) crystal structure of rusticyanin: a highly oxidizing cupredoxin with extreme acid stability.

作者信息

Walter R L, Ealick S E, Friedman A M, Blake R C, Proctor P, Shoham M

机构信息

Section of Biochemistry, Cell & Molecular Biology, Cornell University, Ithaca, NY 14853, USA.

出版信息

J Mol Biol. 1996 Nov 15;263(5):730-51. doi: 10.1006/jmbi.1996.0612.

Abstract

The X-ray crystal structure of the oxidized form of the extremely stable and highly oxidizing cupredoxin rusticyanin from Thiobacillus ferrooxidans has been determined by the method of multiwavelength anomalous diffraction (MAD) and refined to 1.9 A resolution. Like other cupredoxins, rusticyanin is a copper-containing metalloprotein, which is composed of a core beta-sandwich fold. In rusticyanin the beta-sandwich is composed of a six- and a seven-stranded beta-sheet. Also like other cupredoxins, the copper ion is coordinated by a cluster of four conserved residues (His85, Cys138, His143, Met148) arranged in a distorted tetrahedron. Rusticyanin has a redox potential of 680 mV, roughly twice that of any other cupredoxin, and it is optimally active at pH values < or = 2. By comparison with other cupredoxins, the three-dimensional structure of rusticyanin reveals several possible sources of the chemical differences, including more ordered secondary structure and more intersheet connectivity than other cupredoxins. The acid stability and redox potential of rusticyanin may also be enhanced over other cupredoxins by a more extensive internal hydrogen bonding network and by more extensive hydrophobic interactions surrounding the copper binding site. Finally, reduction in the number of charged residues surrounding the active site may also make a major contribution to acid stability. We propose that the resulting rigid copper binding site, which is constrained by the surrounding hydrophobic environment, structurally and electronically favours Cu(I). We propose that the two extreme chemical properties of rusticyanin are interrelated; the same unique structural features that enhance acid stability also lead to elevated redox potential.

摘要

利用多波长反常衍射(MAD)方法测定了来自氧化亚铁硫杆菌的极其稳定且具有高氧化性的铜蓝蛋白rusticyanin氧化形式的X射线晶体结构,并将其精修至1.9 Å分辨率。与其他铜蓝蛋白一样,rusticyanin是一种含铜金属蛋白,由核心β-折叠片层结构组成。在rusticyanin中,β-折叠片层由一个六股和一个七股β-折叠组成。同样与其他铜蓝蛋白一样,铜离子由排列成扭曲四面体的四个保守残基(His85、Cys138、His143、Met148)簇配位。rusticyanin的氧化还原电位为680 mV,大约是其他任何铜蓝蛋白的两倍,并且在pH值≤2时具有最佳活性。与其他铜蓝蛋白相比,rusticyanin的三维结构揭示了几个可能的化学差异来源,包括比其他铜蓝蛋白更有序的二级结构和更多的片层间连接。rusticyanin的酸稳定性和氧化还原电位也可能通过更广泛的内部氢键网络以及铜结合位点周围更广泛的疏水相互作用而比其他铜蓝蛋白得到增强。最后,活性位点周围带电残基数量的减少也可能对酸稳定性有重大贡献。我们提出,由周围疏水环境所限制的刚性铜结合位点在结构和电子性质上有利于Cu(I)。我们提出,rusticyanin的这两种极端化学性质是相互关联的;增强酸稳定性的相同独特结构特征也导致氧化还原电位升高。

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