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利用随机扩增多态性DNA对两性卤虫进行系统发育研究。

Phylogenetic study of bisexual Artemia using random amplified polymorphic DNA.

作者信息

Badaracco G, Bellorini M, Landsberger N

机构信息

Dipartimento di Genetica e di Biologia dei Microorganismi Università di Milano, Italy.

出版信息

J Mol Evol. 1995 Aug;41(2):150-4. doi: 10.1007/BF00170666.

DOI:10.1007/BF00170666
PMID:7666444
Abstract

Study of polymorphisms in the eukaryotic genome is an important way to discover the evolutionary relationships between species. Artemia (Crustacea, Anostraca) offers a very interesting model for evolutionary studies. In fact the genus, distributed all over the world in hundreds of known biotopes, comprises both bisexual sibling species and parthenogenetic populations easily available from the Artemia Reference Center of Ghent. In spite of great interest in it and its extensive use in aquaculture, little is known about relationships between the different species and intraspecific populations. Recently it has been demonstrated that polymorphisms in genomic fingerprints generated by arbitrarily primed polymerase chain reaction (PCR) can distinguish between strains in many organisms. We have used this technique to estimate the phylogenetic relationships existing between 14 populations living in the American continent, in the Mediterranean area, and in China. The principal coordinate analysis (PCO) obtained from 86 random amplified polymorphic DNA (RAPD) markers indicates that the populations analyzed can be divided into homogeneous clusters representing the four known bisexual species--the American A. franciscana and A. persimilis, the Mediterranean A. salina, and the A. species from China.

摘要

研究真核生物基因组中的多态性是发现物种间进化关系的重要途径。卤虫(甲壳纲,无甲目)为进化研究提供了一个非常有趣的模型。实际上,该属分布于世界各地数百个已知的生物群落中,既包括两性的近缘物种,也有可轻易从根特卤虫参考中心获取的孤雌生殖种群。尽管人们对其兴趣浓厚且在水产养殖中广泛应用,但对于不同物种和种内种群之间的关系却知之甚少。最近有研究表明,通过任意引物聚合酶链反应(PCR)产生的基因组指纹中的多态性能够区分许多生物中的菌株。我们利用这项技术来估计生活在美洲大陆、地中海地区和中国的14个种群之间存在的系统发育关系。从86个随机扩增多态性DNA(RAPD)标记获得的主坐标分析(PCO)表明,所分析的种群可分为代表四个已知两性物种的同质聚类——美洲的弗氏卤虫和秘鲁卤虫、地中海的盐卤虫以及来自中国的卤虫物种。

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引用本文的文献

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A first AFLP-based genetic linkage map for brine shrimp Artemia franciscana and its application in mapping the sex locus.卤虫(Artemia franciscana) AFLP 连锁遗传图谱的首次构建及其在性染色体定位中的应用。
PLoS One. 2013;8(3):e57585. doi: 10.1371/journal.pone.0057585. Epub 2013 Mar 4.
2
Phylogenetic analysis of brine shrimp (Artemia) in China using DNA barcoding.利用DNA条形码技术对中国卤虫进行系统发育分析。
Genomics Proteomics Bioinformatics. 2008 Dec;6(3-4):155-62. doi: 10.1016/S1672-0229(09)60003-6.

本文引用的文献

1
Potential taxonomic use of random amplified polymorphic DNA (RAPD): a case study in Brassica.随机扩增多态性 DNA(RAPD)的潜在分类学用途:以芸薹属为例的研究。
Theor Appl Genet. 1992 Sep;84(7-8):990-4. doi: 10.1007/BF00227415.
2
Identification of apple cultivars using RAPD markers.利用 RAPD 标记鉴定苹果品种。
Theor Appl Genet. 1993 Feb;85(6-7):901-4. doi: 10.1007/BF00225036.
3
Using randomly amplified polymorphic DNA for evaluating genetic relationships among papaya cultivars.利用随机扩增多态性 DNA 评估番木瓜品种间的遗传关系。
Theor Appl Genet. 1993 Feb;85(6-7):697-701. doi: 10.1007/BF00225007.
4
Population genetics and ecology of Artemia: Insights into parthenogenetic reproduction.卤虫的种群遗传学和生态学:对孤雌生殖的认识。
Trends Ecol Evol. 1992 Jul;7(7):232-7. doi: 10.1016/0169-5347(92)90051-C.
5
Speciation in the Artemia genus: mitochondrial DNA analysis of bisexual and parthenogenetic brine shrimps.卤虫属的物种形成:两性生殖和孤雌生殖卤虫的线粒体DNA分析
J Mol Evol. 1994 Feb;38(2):156-68. doi: 10.1007/BF00166162.
6
Satellite DNA in the crustacean Artemia.
Gene. 1986;44(2-3):341-5. doi: 10.1016/0378-1119(86)90200-3.
7
Fingerprinting genomes using PCR with arbitrary primers.使用任意引物通过聚合酶链反应对基因组进行指纹分析。
Nucleic Acids Res. 1990 Dec 25;18(24):7213-8. doi: 10.1093/nar/18.24.7213.
8
Polymorphisms generated by arbitrarily primed PCR in the mouse: application to strain identification and genetic mapping.通过任意引物PCR在小鼠中产生的多态性:应用于品系鉴定和基因图谱绘制。
Nucleic Acids Res. 1991 Jan 25;19(2):303-6. doi: 10.1093/nar/19.2.303.
9
DNA polymorphisms amplified by arbitrary primers are useful as genetic markers.用任意引物扩增的DNA多态性可作为遗传标记。
Nucleic Acids Res. 1990 Nov 25;18(22):6531-5. doi: 10.1093/nar/18.22.6531.
10
Highly repetitive DNA sequence in parthenogenetic Artemia.孤雌生殖卤虫中的高度重复DNA序列。
J Mol Evol. 1991 Jan;32(1):31-6. doi: 10.1007/BF02099926.