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用于测量DNA上抗衡离子凝聚的凝胶电泳法

Gel electrophoresis measurement of counterion condensation on DNA.

作者信息

Ma C, Bloomfield V A

机构信息

Department of Biochemistry, University of Minnesota, St. Paul 55108.

出版信息

Biopolymers. 1995 Feb;35(2):211-6. doi: 10.1002/bip.360350209.

DOI:10.1002/bip.360350209
PMID:7696566
Abstract

We used agarose gel electrophoresis to measure the effective charge neutralization of DNA by counterions of different structure and valence, including Na+, Mg2+, Co(NH3)3+6, and spermidine3+, which competed for binding with an excess of Tris acetate buffer. Linear DNA molecules ranged in size from 1 to 5 kilobases, and supercoiled plasmid pUC18 was also measured. In all cases, the results were in good agreement with theoretical predictions from counterion condensation theory for two-counterion mixtures.

摘要

我们使用琼脂糖凝胶电泳来测量不同结构和价态的抗衡离子(包括Na⁺、Mg²⁺、Co(NH₃)₆³⁺和亚精胺³⁺)对DNA的有效电荷中和作用,这些抗衡离子与过量的醋酸 Tris 缓冲液竞争结合。线性DNA分子的大小范围为1至5千碱基,同时也测量了超螺旋质粒pUC18。在所有情况下,结果与双抗衡离子混合物的抗衡离子凝聚理论的理论预测高度一致。

相似文献

1
Gel electrophoresis measurement of counterion condensation on DNA.用于测量DNA上抗衡离子凝聚的凝胶电泳法
Biopolymers. 1995 Feb;35(2):211-6. doi: 10.1002/bip.360350209.
2
A gel electrophoresis study of the competitive effects of monovalent counterion on the extent of divalent counterions binding to DNA.一项关于单价抗衡离子对二价抗衡离子与DNA结合程度的竞争效应的凝胶电泳研究。
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3
Role of counterion condensation in folding of the Tetrahymena ribozyme. II. Counterion-dependence of folding kinetics.抗衡离子凝聚在嗜热四膜虫核糖核酸酶折叠中的作用。II. 折叠动力学的抗衡离子依赖性。
J Mol Biol. 2001 May 25;309(1):57-68. doi: 10.1006/jmbi.2001.4660.
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Gel and buffer effects on the migration of DNA molecules in agarose.
Appl Theor Electrophor. 1990;1(5):225-31.
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Trivalent counterion condensation on DNA measured by pulse gel electrophoresis.通过脉冲凝胶电泳测量三价抗衡离子在DNA上的凝聚作用。
Biopolymers. 1996 Mar;38(3):367-76. doi: 10.1002/(sici)1097-0282(199603)38:3<367::aid-bip9>3.0.co;2-s.
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Monte Carlo and Poisson-Boltzmann calculations of the fraction of counterions bound to DNA.结合到DNA上的抗衡离子分数的蒙特卡罗和泊松-玻尔兹曼计算。
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The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. Possible implications for DNA structure in vivo.在抗衡离子诱导的从松散缠绕到紧密缠绕超螺旋的转变过程中,超螺旋DNA的扭曲、缠绕及整体形状会发生变化。这对体内DNA结构可能具有的影响。
J Mol Biol. 1994 Jan 21;235(3):825-47. doi: 10.1006/jmbi.1994.1042.
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Do DNA gel electrophoretic mobilities extrapolate to the free-solution mobility of DNA at zero gel concentration?DNA凝胶电泳迁移率能否外推至凝胶浓度为零时DNA在自由溶液中的迁移率?
Electrophoresis. 1998 May;19(5):635-42. doi: 10.1002/elps.1150190504.
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Density-functional theory and Monte Carlo simulation study on the electric double layer around DNA in mixed-size counterion systems.混合尺寸抗衡离子体系中DNA周围双电层的密度泛函理论与蒙特卡罗模拟研究
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Distinction between supercoiled and linear DNA in transverse agarose pore gradient gel electrophoresis.横向琼脂糖孔梯度凝胶电泳中超螺旋DNA与线性DNA的区分
Electrophoresis. 1992 Jul;13(7):403-6. doi: 10.1002/elps.1150130185.

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