Watkins J A, Cusanovich M A, Meyer T E, Tollin G
Department of Biochemistry, University of Arizona, Tucson 85721.
Protein Sci. 1994 Nov;3(11):2104-14. doi: 10.1002/pro.5560031124.
A "parallel plate" model describing the electrostatic potential energy of protein-protein interactions is presented that provides an analytical representation of the effect of ionic strength on a biomolecular rate constant. The model takes into account the asymmetric distribution of charge on the surface of the protein and localized charges at the site of electron transfer that are modeled as elements of a parallel plate condenser. Both monopolar and dipolar interactions are included. Examples of simple (monophasic) and complex (biphasic) ionic strength dependencies obtained from experiments with several electron transfer protein systems are presented, all of which can be accommodated by the model. The simple cases do not require the use of both monopolar and dipolar terms (i.e., they can be fit well by either alone). The biphasic dependencies can be fit only by using dipolar and monopolar terms of opposite sign, which is physically unreasonable for the molecules considered. Alternatively, the high ionic strength portion of the complex dependencies can be fit using either the monopolar term alone or the complete equation; this assumes a model in which such behavior is a consequence of electron transfer mechanisms involving changes in orientation or site of reaction as the ionic strength is varied. Based on these analyses, we conclude that the principal applications of the model presented here are to provide information about the structural properties of intermediate electron transfer complexes and to quantify comparisons between related proteins or site-specific mutants. We also conclude that the relative contributions of monopolar and dipolar effects to protein electron transfer kinetics cannot be evaluated from experimental data by present approximations.
提出了一种描述蛋白质 - 蛋白质相互作用静电势能的“平行板”模型,该模型提供了离子强度对生物分子速率常数影响的解析表达式。该模型考虑了蛋白质表面电荷的不对称分布以及电子转移位点处的局部电荷,这些电荷被建模为平行板电容器的元件。单极和偶极相互作用均被纳入考虑。文中给出了从多个电子转移蛋白系统实验中获得的简单(单相)和复杂(双相)离子强度依赖性的示例,所有这些示例都能被该模型所涵盖。简单情况不需要同时使用单极和偶极项(即,仅用其中任何一项都能很好地拟合)。双相依赖性只能通过使用符号相反的偶极和单极项来拟合,这对于所考虑的分子来说在物理上是不合理的。或者,复杂依赖性的高离子强度部分可以仅使用单极项或完整方程来拟合;这假定了一种模型,其中这种行为是电子转移机制的结果,该机制涉及随着离子强度变化反应方向或反应位点的改变。基于这些分析,我们得出结论,本文提出的模型的主要应用是提供有关中间电子转移复合物结构性质的信息,并对相关蛋白质或位点特异性突变体之间进行定量比较。我们还得出结论,目前的近似方法无法从实验数据中评估单极和偶极效应对蛋白质电子转移动力学的相对贡献。