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大肠杆菌RNA聚合酶E sigma 38对重叠启动子的选择性以及支持CRP激活的能力。

Selectivity of the Escherichia coli RNA polymerase E sigma 38 for overlapping promoters and ability to support CRP activation.

作者信息

Kolb A, Kotlarz D, Kusano S, Ishihama A

机构信息

Unité de Physicochimie des Macromolécules Biologiques, URA 1149 du CNRS, Paris, France.

出版信息

Nucleic Acids Res. 1995 Mar 11;23(5):819-26. doi: 10.1093/nar/23.5.819.

DOI:10.1093/nar/23.5.819
PMID:7708498
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC306765/
Abstract

A series of gal promoter mutants has been used to compare the in vitro selectivities of the two forms of Escherichia coli RNA polymerase, E sigma 38 and E sigma 70. In the absence of the CRP-cAMP complex, E sigma 38 shows a strong preference for the ga/P1 promoter, whereas E sigma 70 preferentially initiates transcription from the ga/P2 promoter. E sigma 38 selectivity is not affected by the nature and position of the upstream sequences or by the phasing between synthetic upstream curved sequences and the -10 regions. In fact, all effects of mutations in the extended -10 region can be accounted for without evoking strong new sequence preferences for E sigma 38. Finally, both E sigma 38 and E sigma 70 initiate transcription from the ga/P1 promoter in the presence of CRP-cAMP complex and support direct cAMP-CRP activation at several CRP-dependent promoters.

摘要

一系列gal启动子突变体已被用于比较两种形式的大肠杆菌RNA聚合酶E sigma 38和E sigma 70的体外选择性。在没有CRP-cAMP复合物的情况下,E sigma 38对ga/P1启动子表现出强烈偏好,而E sigma 70优先从ga/P2启动子起始转录。E sigma 38的选择性不受上游序列的性质和位置或合成上游弯曲序列与-10区域之间相位的影响。事实上,在不引发E sigma 38强烈新序列偏好的情况下,可以解释延伸-10区域突变的所有影响。最后,在存在CRP-cAMP复合物的情况下,E sigma 38和E sigma 70都从ga/P1启动子起始转录,并在几个CRP依赖性启动子处支持直接的cAMP-CRP激活。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40b4/306765/eb18627527ca/nar00005-0109-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40b4/306765/a1aebb0af8f7/nar00005-0106-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40b4/306765/eb18627527ca/nar00005-0109-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40b4/306765/a1aebb0af8f7/nar00005-0106-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40b4/306765/eb18627527ca/nar00005-0109-a.jpg

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本文引用的文献

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J Bacteriol. 1993 May;175(9):2483-9. doi: 10.1128/jb.175.9.2483-2489.1993.
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Heterogeneity of the principal sigma factor in Escherichia coli: the rpoS gene product, sigma 38, is a second principal sigma factor of RNA polymerase in stationary-phase Escherichia coli.大肠杆菌中主要σ因子的异质性:rpoS基因产物σ38是静止期大肠杆菌中RNA聚合酶的第二个主要σ因子。
Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3511-5. doi: 10.1073/pnas.90.8.3511.
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KatF (sigma S) synthesis in Escherichia coli is subject to posttranscriptional regulation.
肠集聚性和泌尿道致病性 启动子的新型组织和调控。
Virulence. 2022 Dec;13(1):1393-1406. doi: 10.1080/21505594.2022.2111754.
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Widespread divergent transcription from bacterial and archaeal promoters is a consequence of DNA-sequence symmetry.细菌和古菌启动子的广泛发散转录是 DNA 序列对称性的结果。
Nat Microbiol. 2021 Jun;6(6):746-756. doi: 10.1038/s41564-021-00898-9. Epub 2021 May 6.
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Activation by NarL at the Escherichia coli ogt promoter.在大肠杆菌ogt 启动子上由 NarL 的激活作用。
Biochem J. 2020 Aug 14;477(15):2807-2820. doi: 10.1042/BCJ20200408.
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A non-canonical promoter element drives spurious transcription of horizontally acquired bacterial genes.非规范启动子元件驱动水平获得的细菌基因的假转录。
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The quorum sensing transcription factor AphA directly regulates natural competence in Vibrio cholerae.群体感应转录因子 AphA 直接调控霍乱弧菌的自然感受态。
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