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体外制备有功能的重组(杂交)DNA分子(基因工程实验)

[Preparation of functioning recombinant (hybrid) DNA molecules in vitro (genetic engineering experiments)].

作者信息

Alikhanian S I, Khlebalina O I, Stepanov A I, Beburov M Iu, Kalinina N V

出版信息

Genetika. 1975;11(11):34-45.

PMID:776738
Abstract

In this paper we describe the preparation of hybrid plasmid consisting of ColE1 DNA and DNA of R6K plasmid. ColE1 plasmid represents a circular DNA with the molecular weight of 4,2-10(6) daltons. It determines colicine synthesis E1, has relaxed control of replication and is present in the cell in several dozens copies. Transmissive plasmid B6K represents a circular DNA molecule with the molecular weight of 28-10(6) daltons. It confers the resistance to amplicillin and streptomycin and belongs to the compatibility group X. This plasmid also has relaxed control of replication (up to 30 copies per cell). Circular superhelical DNA of ColE1 was prepared after it is amplification with cloramphenicol according to Clewell by ultracentrifugation in CsCl-EtBr density gradient. The yield of superhelical ColE1 DNA in our experiments was up to 300 mg/gram cells. Circular superhelical R6K DNA was isolated from E. coli strain J53 R6K grown to stationary phase in the presence of 15 mg/ml of streptomycin. The yield of superhelical DNA was equal to about 45 mg per 1 gram cells. EcoR1 restrictase was prepared from E. coli KM182 as described by Thomas et al. From 37 grams of cells 10 ml of enzyme solution was prepared. 1 ml of this solution was able to restrict completely 2 mg of ColE1 DNA during Hu incubation for 30 degrees min at 37 degrees C. Restrictase activity was analyzed by electrophoresis of ColE1 DNA restricts in 0,7% agarose gel as described by Tanaka. DNA ligase was prepared from E. coli B. cells infected by T4 phage am81 mutant as described by Weiss. The activity of enzyme solution was equal to 90 units/ml (according to Richardson). In standard "hybridization" experiment 4 mug of ColE1 DNA and 4 mug of R6K DNA were incubated for 1 hour at 37 degrees in 0,2 ml of the solution containing 40 mM tris-HCl, pH 7,4; 10 mM MgCl2 50 mM NaCl, 10 mM mercaptoethanol and 5 mul of EcoR1 restrictase. The reaction was terminated by heating the reaction mixture to 65 degrees C for 5 min. In accordance with the results of others CoLE1 DNA gave one restrict and R6K DNA-two restricted fragments. 100 mul of the restricted mixture was chilled to 0 degrees and the following ingredients were added 10 mul of 50 mM MgCl2; 10 mul of 100 mM dithiotreitol; 10 mul of 0,5 mM ATP, 20 mul of water and 8 mul of ligase solution (90 units/mul). The mixture was incubated at 0-0,5 degrees for 53 hours, thereafter it was used for the transformation of E. coli C600 according to Tanaka et al. Several classes of hybrid molecules due to different combinations of restricted fragments of parental species were expected. These molecules had to confer the immunity to colicine E1 and to carry the defect in the gene controlling colicine synthesis since EcoR1 restrictase splits ColE1 DNA in the region of corresponding gene. In addition, certain classes of transformants with hybrid DNA molecules had to be resistant to one or both antibiotics as determined by the R6K plasmid portion...

摘要

在本文中,我们描述了由ColE1 DNA和R6K质粒DNA组成的杂种质粒的制备。ColE1质粒是一种环状DNA,分子量为4.2×10⁶道尔顿。它决定了大肠杆菌素E1的合成,对复制具有松弛控制,并且在细胞中以几十份的形式存在。转移性质粒R6K是一种分子量为28×10⁶道尔顿的环状DNA分子。它赋予对氨苄青霉素和链霉素的抗性,属于相容群X。该质粒对复制也具有松弛控制(每个细胞多达30份)。ColE1的环状超螺旋DNA在用氯霉素扩增后,按照Clewell的方法,通过在CsCl-EtBr密度梯度中进行超速离心来制备。在我们的实验中,超螺旋ColE1 DNA的产量高达300毫克/克细胞。环状超螺旋R6K DNA是从在15毫克/毫升链霉素存在下生长至稳定期的大肠杆菌J53 R6K菌株中分离得到的。超螺旋DNA的产量约为每1克细胞45毫克。EcoR1限制酶按照Thomas等人的方法从大肠杆菌KM182制备。从37克细胞中制备了10毫升酶溶液。1毫升该溶液在37℃下孵育30分钟时能够完全切割2毫克ColE1 DNA。限制酶活性通过按照Tanaka的方法在0.7%琼脂糖凝胶中对ColE1 DNA酶切产物进行电泳分析。DNA连接酶按照Weiss的方法从被T4噬菌体am81突变体感染的大肠杆菌B细胞中制备。酶溶液的活性为90单位/毫升(根据Richardson)。在标准的“杂交”实验中,将4微克ColE1 DNA和4微克R6K DNA在含有40 mM Tris-HCl(pH 7.4)、10 mM MgCl₂、50 mM NaCl、10 mM巯基乙醇和5微升EcoR1限制酶的0.2毫升溶液中于37℃孵育1小时。通过将反应混合物加热至65℃ 5分钟来终止反应。根据其他人的结果,ColE1 DNA产生一个酶切片段,R6K DNA产生两个酶切片段。将100微升酶切混合物冷却至0℃,并加入以下成分:10微升50 mM MgCl₂;10微升100 mM二硫苏糖醇;10微升0.5 mM ATP、20微升水和8微升连接酶溶液(90单位/微升)。混合物在0 - 0.5℃孵育53小时,此后按照Tanaka等人的方法用于转化大肠杆菌C600。由于亲本物种的酶切片段的不同组合,预期会有几类杂种分子。这些分子必须赋予对大肠杆菌素E1的免疫性,并且由于EcoR1限制酶在相应基因区域切割ColE1 DNA,所以在控制大肠杆菌素合成的基因中存在缺陷。此外,某些带有杂种DNA分子的转化体类别必须如R6K质粒部分所决定的那样对一种或两种抗生素具有抗性……

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