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腺苷钴胺素依赖性谷氨酸变位酶中的氚同位素效应:对机制的启示

Tritium isotope effects in adenosylcobalamin-dependent glutamate mutase: implications for the mechanism.

作者信息

Marsh E N

机构信息

Department of Biochemistry, University of Cambridge, United Kingdom.

出版信息

Biochemistry. 1995 Jun 6;34(22):7542-7. doi: 10.1021/bi00022a030.

DOI:10.1021/bi00022a030
PMID:7779799
Abstract

The transfer of tritium between adenosylcobalamin and substrate in the reaction catalyzed by glutamate mutase was examined to investigate the possibility of a protein-based radical intermediate. There was no evidence that tritium was transferred to the protein during the reaction, as tritium neither became stably bound to the protein nor exchanged with water. The kinetics of tritium transfer from adenosylcobalamin to 3-methylaspartate was investigated. Both the transfer of tritium to product and the exchange of enzyme-bound and free coenzyme contribute to the kinetics of tritium loss from adenosylcobalamin. By varying the experimental conditions, the rates of both coenzyme exchange and tritium transfer could be measured. Exchange of adenosylcobalamin with enzyme is very slow, k off = 0.01 s-1, which may reflect a conformational change in the coenzyme and/or protein involved in forming active holo enzyme. The rate constants for the loss of tritium from adenosylcobalamin and the appearance of tritium in 3-methylaspartate are much faster and very similar, k = 0.67 +/- 0.05 s-1 and k = 0.50 +/- 0.05 s-1, respectively, consistent with the transfer of tritium occurring directly between coenzyme and substrate. The isotope effect, calculated from the rate constants for tritium transfer, and kcat, determined for the overall reaction under the same conditions, are between 13.5 and 18. These values are typical of primary isotope effects seen for enzymes in which hydrogen transfer is substantially rate limiting. A protein radical, therefore, appears unlikely to feature in the mechanism of this enzyme.

摘要

为了研究基于蛋白质的自由基中间体的可能性,对谷氨酸变位酶催化反应中腺苷钴胺素与底物之间的氚转移进行了研究。没有证据表明反应过程中氚转移到了蛋白质上,因为氚既没有稳定地结合到蛋白质上,也没有与水发生交换。研究了氚从腺苷钴胺素转移到3-甲基天冬氨酸的动力学。氚向产物的转移以及酶结合辅酶与游离辅酶的交换都对腺苷钴胺素中氚的损失动力学有贡献。通过改变实验条件,可以测量辅酶交换和氚转移的速率。腺苷钴胺素与酶的交换非常缓慢,k离解 = 0.01 s-1,这可能反映了参与形成活性全酶的辅酶和/或蛋白质的构象变化。腺苷钴胺素中氚的损失速率常数和3-甲基天冬氨酸中氚的出现速率常数要快得多且非常相似,分别为k = 0.67±0.05 s-1和k = 0.50±0.05 s-1,这与氚直接在辅酶和底物之间转移一致。根据氚转移的速率常数计算出的同位素效应以及在相同条件下测定的总反应的kcat在13.5至18之间。这些值是氢转移基本上限制反应速率的酶所具有的典型一级同位素效应。因此,该酶的作用机制中似乎不太可能存在蛋白质自由基。

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