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Methods Enzymol. 2022;669:151-172. doi: 10.1016/bs.mie.2021.12.018. Epub 2022 Jan 28.
2
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本文引用的文献

1
Transition States and transition state analogue interactions with enzymes.过渡态及过渡态类似物与酶的相互作用。
Acc Chem Res. 2015 Apr 21;48(4):1032-9. doi: 10.1021/acs.accounts.5b00002. Epub 2015 Apr 7.
2
Recent advances in radical SAM enzymology: new structures and mechanisms.自由基S-腺苷甲硫氨酸酶学的最新进展:新结构与机制
ACS Chem Biol. 2014 Sep 19;9(9):1929-38. doi: 10.1021/cb5004674. Epub 2014 Jul 16.
3
Radical S-adenosylmethionine enzymes.自由基S-腺苷甲硫氨酸酶
Chem Rev. 2014 Apr 23;114(8):4229-317. doi: 10.1021/cr4004709. Epub 2014 Jan 29.
4
Role of active site residues in promoting cobalt-carbon bond homolysis in adenosylcobalamin-dependent mutases revealed through experiment and computation.通过实验和计算揭示了活性位点残基在促进依赖于腺苷钴胺素的突变酶中的钴-碳键均裂中的作用。
Biochemistry. 2014 Jan 14;53(1):169-77. doi: 10.1021/bi4012644. Epub 2013 Dec 20.
5
Adenosylcobalamin enzymes: theory and experiment begin to converge.腺苷钴胺素酶:理论与实验开始趋于一致。
Biochim Biophys Acta. 2012 Nov;1824(11):1154-64. doi: 10.1016/j.bbapap.2012.03.012. Epub 2012 Apr 3.
6
Enzymatic transition states, transition-state analogs, dynamics, thermodynamics, and lifetimes.酶的过渡态、过渡态类似物、动力学、热力学和寿命。
Annu Rev Biochem. 2011;80:703-32. doi: 10.1146/annurev-biochem-061809-100742.
7
Hydrogen tunneling in adenosylcobalamin-dependent glutamate mutase: evidence from intrinsic kinetic isotope effects measured by intramolecular competition.腺苷钴胺素依赖型谷氨酸变位酶中的氢隧穿:通过分子内竞争测量的固有动力学同位素效应证据。
Biochemistry. 2010 Apr 13;49(14):3168-73. doi: 10.1021/bi1001695.
8
Intrinsic deuterium kinetic isotope effects in glutamate mutase measured by an intramolecular competition experiment.通过分子内竞争实验测定谷氨酸变位酶中的内在氘动力学同位素效应。
Angew Chem Int Ed Engl. 2007;46(44):8455-9. doi: 10.1002/anie.200702448.
9
Synthesis of Mono- and Di-Deuterated (2S, 3S)-3-Methylaspartic Acids to Facilitate Measurement of Intrinsic Kinetic Isotope Effects in Enzymes.单氘代和双氘代(2S, 3S)-3-甲基天冬氨酸的合成以促进酶中固有动力学同位素效应的测量。
Tetrahedron. 2007 May 28;63(22):4663-4668. doi: 10.1016/j.tet.2007.03.107.
10
Evidence for coupled motion and hydrogen tunneling of the reaction catalyzed by glutamate mutase.谷氨酸变位酶催化反应的耦合运动和氢隧穿的证据。
Biochemistry. 2007 Jan 23;46(3):883-9. doi: 10.1021/bi0616908.

利用动力学同位素效应探究腺苷钴胺素依赖酶的作用机制。

Using kinetic isotope effects to probe the mechanism of adenosylcobalamin-dependent enzymes.

机构信息

Department of Chemistry, University of Michigan, Ann Arbor, MI, United States; Department of Biological Chemistry, University of Michigan, Ann Arbor, MI, United States.

出版信息

Methods Enzymol. 2022;669:151-172. doi: 10.1016/bs.mie.2021.12.018. Epub 2022 Jan 28.

DOI:10.1016/bs.mie.2021.12.018
PMID:35644170
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11141886/
Abstract

Adenosylcobalamin- (AdoCbl) dependent enzyme reactions involved the transfer of hydrogen atoms between the 5'-carbon of the coenzyme and the substrates and products of the reaction. Tritium and deuterium kinetic isotope effect measurements are, therefore, a valuable tool to probe the mechanisms of AdoCbl-dependent enzymes, as they can provide information about the reaction pathway and the rate-determining step. Furthermore, if the intrinsic kinetic isotope effect can be isolated, information on the nature of the transition state associated with hydrogen transfer can be obtained. In this chapter I present methods for the preparation of isotopically-labeled AdoCbl and their use in rapid chemical quench experiments that allow isotope effects on specific steps in the reaction to be isolated. These techniques are illustrated with examples from my laboratory's studies on the AdoCbl dependent enzyme, glutamate mutase.

摘要

腺钴胺素(AdoCbl)依赖性酶反应涉及辅酶 5'-碳与反应的底物和产物之间氢原子的转移。因此,氚和氘动力学同位素效应测量是研究 AdoCbl 依赖性酶机制的一种有价值的工具,因为它们可以提供有关反应途径和速率决定步骤的信息。此外,如果可以分离出固有动力学同位素效应,则可以获得与氢转移相关的过渡态的性质的信息。在本章中,我介绍了制备同位素标记的腺钴胺素的方法及其在快速化学猝灭实验中的应用,这些实验可以分离反应中特定步骤的同位素效应。这些技术通过我实验室对腺钴胺素依赖性酶谷氨酸变位酶的研究示例进行了说明。