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糖苷酶活性位点残基的标记和鉴定方法。

Approaches to labeling and identification of active site residues in glycosidases.

作者信息

Withers S G, Aebersold R

机构信息

Department of Chemistry, University of British Columbia, Vancouver, Canada.

出版信息

Protein Sci. 1995 Mar;4(3):361-72. doi: 10.1002/pro.5560040302.

DOI:10.1002/pro.5560040302
PMID:7795519
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2143074/
Abstract

Glycosidases play a key role in a number of biological processes and, as such, are of considerable clinical and biotechnological importance. Knowledge of the identifies of catalytically important active site residues is essential for understanding the catalytic mechanism, for enzyme classification, and for targeted bioengineering of glycosidases with altered characteristics. Here we review and discuss traditional strategies and novel approaches based on tandem mass spectrometry for the identification of the key active site residues in glycosidases.

摘要

糖苷酶在许多生物过程中发挥着关键作用,因此在临床和生物技术方面具有相当重要的意义。了解催化重要活性位点残基的身份对于理解催化机制、酶分类以及对具有改变特性的糖苷酶进行靶向生物工程至关重要。在这里,我们回顾并讨论基于串联质谱法鉴定糖苷酶关键活性位点残基的传统策略和新方法。

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2
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本文引用的文献

1
Structure and molecular model refinement of pig pancreatic alpha-amylase at 2.1 A resolution.猪胰α-淀粉酶在2.1埃分辨率下的结构与分子模型优化
J Mol Biol. 1993 Jun 5;231(3):785-99. doi: 10.1006/jmbi.1993.1326.
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beta-1,4-D-xylan-degrading enzyme systems: biochemistry, molecular biology and applications.β-1,4-D-木聚糖降解酶系统:生物化学、分子生物学及应用
Biotechnol Appl Biochem. 1993 Jun;17(3):259-89.
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The 2.0-A resolution structure of soybean beta-amylase complexed with alpha-cyclodextrin.大豆β-淀粉酶与α-环糊精复合的2.0埃分辨率结构。
Biochemistry. 1993 Jul 13;32(27):6836-45. doi: 10.1021/bi00078a006.
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Refined structure for the complex of acarbose with glucoamylase from Aspergillus awamori var. X100 to 2.4-A resolution.来自泡盛曲霉变种X100的葡萄糖淀粉酶与阿卡波糖复合物的精细结构,分辨率达2.4埃。
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5
N-bromoacetyl-glycopyranosylamines as affinity labels for a beta-glucosidase and a cellulase.N-溴乙酰基-吡喃葡萄糖胺作为β-葡萄糖苷酶和纤维素酶的亲和标记物。
Carbohydr Res. 1993 Dec 16;250(1):195-202. doi: 10.1016/0008-6215(93)84166-4.
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Glu280 is the nucleophile in the active site of Clostridium thermocellum CelC, a family A endo-beta-1,4-glucanase.谷氨酸280是嗜热栖热菌CelC(一种A家族内切β-1,4-葡聚糖酶)活性位点中的亲核试剂。
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7
Identification of an essential glutamate residue in the active site of endoglucanase III from Trichoderma reesei.里氏木霉内切葡聚糖酶III活性位点中一个必需谷氨酸残基的鉴定。
FEBS Lett. 1993 Jan 25;316(2):137-40. doi: 10.1016/0014-5793(93)81202-b.
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Mutational and crystallographic analyses of the active site residues of the Bacillus circulans xylanase.环状芽孢杆菌木聚糖酶活性位点残基的突变及晶体学分析
Protein Sci. 1994 Mar;3(3):467-75. doi: 10.1002/pro.5560030312.
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Crystal structure of the catalytic domain of the beta-1,4-glycanase cex from Cellulomonas fimi.来自纤维单胞菌的β-1,4-聚糖酶cex催化结构域的晶体结构
Biochemistry. 1994 Oct 25;33(42):12546-52. doi: 10.1021/bi00208a003.
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Identification of glutamic acid 78 as the active site nucleophile in Bacillus subtilis xylanase using electrospray tandem mass spectrometry.利用电喷雾串联质谱法鉴定枯草芽孢杆菌木聚糖酶中作为活性位点亲核试剂的谷氨酸78
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