Suppr超能文献

用连续介质模型对水合热力学进行定量评估。

Quantitative evaluation of hydration thermodynamics with a continuum model.

作者信息

Rashin A A, Young L, Topol I A

机构信息

BioChemComp Inc, Teaneck, NJ 07666.

出版信息

Biophys Chem. 1994 Aug;51(2-3):359-73; discussion 373-4. doi: 10.1016/0301-4622(94)00058-1.

Abstract

We attempt to analyze whether experimental entropies, enthalpies and free energies of hydration of small uncharged molecules can be quantitatively rationalized with a continuum model including a classical reaction field formalism. We find that a simple proportionality to accessible surface with five different atom types allows satisfactory (within 1-1.5 kcal/mol) reproduction of hydration entropies (T delta S) of over 40 solutes. The agreement with experiment can possibly be improved if proximity effects and configurational contributions to transfer entropies are taken into account. In calculations of hydration enthalpies a reasonable agreement with experimental data can be obtained only when solute polarizability is taken into account. Electrostatic contributions to calculated hydration enthalpies exhibit strong dependencies on both the magnitude and the direction of molecular dipole moments. We demonstrate that for 20 molecules with experimentally measured vacuum dipole moments density functional calculations with DZVPD basis set including diffuse functions on d-orbitals allows prediction of experimental dipole moments within 0.1 D. At a fixed direction of the molecular dipole moment, mu, the electrostatic component of hydration enthalpy varies as mu 2. Thus an uncertainty of 0.1 D corresponds to uncertainties of 0.5-0.7 kcal/mol in hydration enthalpies of most small dipolar solutes. A 30 degree change in the direction of the molecular dipole together with the corresponding change in the quadrupole moment can result in a change of hydration enthalpy of 3 kcal/mol. Changes in the quadrupole moment alone can result in hydration enthalpy changes of over 1 kcal/mol. Representations of multipole expansions by point charges on nuclei fitted to molecular electrostatic potentials cannot accurately reproduce all these factors. Use of such point charges in calculations of hydration enthalpies predictably leads to discrepancies with experiment of approximately 3 kcal/mol for some solutes. However, errors in hydration enthalpies and hydration entropies are usually compensating leading in most cases to agreement between calculated and experimental free energies of hydration within 1.5 kcal/mol.

摘要

我们试图分析小分子电中性分子的实验熵、焓和水化自由能是否能用包含经典反应场形式的连续介质模型进行定量合理化。我们发现,与五种不同原子类型的可及表面积成简单比例关系,能使40多种溶质的水化熵(TΔS)得到令人满意的(在1 - 1.5千卡/摩尔范围内)重现。如果考虑到邻近效应和转移熵的构型贡献,与实验的一致性可能会得到改善。在水化焓的计算中,只有考虑溶质极化率时,才能与实验数据取得合理的一致性。计算得到的水化焓的静电贡献对分子偶极矩的大小和方向都有很强的依赖性。我们证明,对于20个具有实验测量真空偶极矩的分子,使用包含d轨道弥散函数的DZVPD基组进行密度泛函计算,能将实验偶极矩预测在0.1 D以内。在分子偶极矩μ的固定方向上,水化焓的静电分量随μ²变化。因此,0.1 D的不确定性对应于大多数小偶极溶质水化焓中0.5 - 0.7千卡/摩尔的不确定性。分子偶极矩方向30度的变化以及相应的四极矩变化可导致水化焓变化3千卡/摩尔。仅四极矩的变化就能导致水化焓变化超过1千卡/摩尔。用拟合分子静电势的原子核上的点电荷来表示多极展开,不能准确再现所有这些因素。在水化焓的计算中使用这种点电荷,对于某些溶质,可预见会导致与实验相差约3千卡/摩尔的差异。然而,水化焓和水化熵的误差通常相互补偿,在大多数情况下导致计算得到的和实验测得的水化自由能在1.5千卡/摩尔范围内一致。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验