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利用可移动物理图谱标记进行比较基因组图谱绘制。

Comparative genome mapping with mobile physical map landmarks.

作者信息

Bloch C A, Rode C K, Obreque V, Russell K Y

机构信息

Department of Pediatrics, School of Medicine, University of Michigan, Ann Arbor 48109.

出版信息

J Bacteriol. 1994 Nov;176(22):7121-5. doi: 10.1128/jb.176.22.7121-7125.1994.

DOI:10.1128/jb.176.22.7121-7125.1994
PMID:7961483
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC197093/
Abstract

We describe a method for comparative macrorestriction mapping of the chromosomes of Escherichia coli strains. In this method, a series of physically tagged E. coli K-12 alleles serve as mobile landmarks for mapping DNAs from other strains. This technique revealed evidence of strain-specific chromosomal additions or deletions in a pathogenic isolate and can be applied to most strains, yielding information on genealogy as well as virulence. In theory, the same strategy can be used to map and compare genomic DNAs from a wide variety of species.

摘要

我们描述了一种用于大肠杆菌菌株染色体比较宏观限制性图谱分析的方法。在该方法中,一系列经过物理标记的大肠杆菌K-12等位基因作为移动标记,用于绘制其他菌株的DNA图谱。这项技术揭示了一种致病分离株中存在菌株特异性染色体添加或缺失的证据,并且可应用于大多数菌株,从而提供有关谱系以及毒力的信息。理论上,相同的策略可用于绘制和比较来自多种物种的基因组DNA。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/396b/197093/bef30e26bce7/jbacter00040-0350-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/396b/197093/bef30e26bce7/jbacter00040-0350-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/396b/197093/bef30e26bce7/jbacter00040-0350-a.jpg

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本文引用的文献

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GENETIC ANALYSES OF SALMONELLA TYPHIMURIUM X ESCHERICHIA COLI HYBRIDS.鼠伤寒沙门氏菌与大肠杆菌杂交种的遗传分析
Proc Natl Acad Sci U S A. 1964 Aug;52(2):317-23. doi: 10.1073/pnas.52.2.317.
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XbaI and BlnI genomic cleavage maps of Escherichia coli K-12 strain MG1655 and comparative analysis of other strains.大肠杆菌K-12菌株MG1655的XbaI和BlnI基因组切割图谱及其他菌株的比较分析
J Mol Biol. 1993 Jul 20;232(2):419-45. doi: 10.1006/jmbi.1993.1401.
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Use of a novel approach, termed island probing, identifies the Shigella flexneri she pathogenicity island which encodes a homolog of the immunoglobulin A protease-like family of proteins.使用一种称为岛状探针的新方法,鉴定出了福氏志贺氏菌的致病岛,该致病岛编码免疫球蛋白A蛋白酶样蛋白家族的一个同源物。
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Pathogenicity island sequences of pyelonephritogenic Escherichia coli CFT073 are associated with virulent uropathogenic strains.致肾盂肾炎大肠杆菌CFT073的致病岛序列与毒性尿路致病性菌株相关。
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Pathogenicity island evaluation in Escherichia coli K1 by crossing with laboratory strain K-12.通过与实验室菌株K-12杂交对大肠杆菌K1中的致病岛进行评估。
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Molecular evolution of the Escherichia coli chromosome. IV. Sequence comparisons.大肠杆菌染色体的分子进化。IV. 序列比较。
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