Gray J V, Knowles J R
Department of Chemistry, Harvard University, Cambridge, Massachusetts 02138.
Biochemistry. 1994 Aug 23;33(33):9953-9. doi: 10.1021/bi00199a018.
The Fourier transform infrared (FTIR) spectrum of the complex between prephenate and the monofunctional chorismate mutase from Bacillus subtilis displays one prominent band at 1714 cm-1. Using isotopically-labeled ligand, we have shown that this band corresponds to the ketonic carbonyl stretching vibration of enzyme-bound prephenate. The frequency of this carbonyl vibration of prephenate does not change significantly on binding to the protein. These data indicate that chorismate mutase does not use electrophilic catalysis in the rearrangement of chorismate. A comparison of the resolution-enhanced FTIR spectra of the unliganded mutase and of the protein complexed with its ligands reveals marked differences in the amide I' vibration band. These changes suggest that structural alterations in the protein occur upon binding prephenate. When combined with information from the crystal structure of the enzyme and its complexes, it appears that significant ordering of the C-terminal region occurs upon ligand binding. These changes at the active site may be important for efficient catalysis and likely influence the association and dissociation rates of the enzyme and its ligands. The enzymic rearrangement of chorismate evidently proceeds via a pericyclic process, and much, if not all, of the rate acceleration derives from the selective binding of the appropriate conformer of the substrate, with some additional contribution possible from electrostatic stabilization of the transition state.
来自枯草芽孢杆菌的预苯酸与单功能分支酸变位酶复合物的傅里叶变换红外(FTIR)光谱在1714 cm-1处显示出一个突出的谱带。使用同位素标记的配体,我们已经表明该谱带对应于与酶结合的预苯酸的酮羰基伸缩振动。预苯酸的这种羰基振动频率在与蛋白质结合时没有显著变化。这些数据表明分支酸变位酶在分支酸重排中不使用亲电催化。对未结合配体的变位酶及其与配体复合的蛋白质的分辨率增强FTIR光谱进行比较,发现在酰胺I'振动带中存在显著差异。这些变化表明在结合预苯酸时蛋白质发生了结构改变。当与来自该酶及其复合物晶体结构的信息相结合时,似乎在配体结合后C末端区域发生了显著的有序化。活性位点的这些变化对于有效催化可能很重要,并且可能影响酶及其配体的缔合和解离速率。分支酸的酶促重排显然通过周环过程进行,并且大部分(如果不是全部)速率加速来自底物适当构象体的选择性结合,过渡态的静电稳定可能有一些额外贡献。