Rajagopalan J S, Taylor K M, Jaffe E K
Institute for Cancer Research, Fox Chase Cancer Center, Philadelphia, Pennsylvania 19111.
Biochemistry. 1993 Apr 20;32(15):3965-72. doi: 10.1021/bi00066a017.
The chorismate mutase reaction is a rare enzyme-catalyzed 3,3-sigmatropic rearrangement of chorismate to prephenate. Bacillus subtilis chorismate mutase was overproduced and purified from Escherichia coli XL1-Blue (pBSCM2) using a modification of the procedure of Gray et al. (Gray, J. V., Grolinelli-Pimpaneau, B., & Knowles, J. R. (1990) Biochemistry 29, 376-383); the modification leads to minimal contaminating prephenate dehydratase activity (< 0.001%). The native molecular mass of B. subtilis chorismate mutase was determined by gel filtration to be approximately 44 kDa, indicative of a homotrimer of the 14.5-kDa subunits as determined by electrospray mass spectrometry. 13C NMR was used to study the structure of [U-13C]prephenate bound at the active site of B. subtilis chorismate mutase. All the enzyme-bound 13C NMR resonances of [U-13C]prephenate were assigned, and where possible, 1JC,Cs were quantified; [1,3,5,8-13C]prephenate and [2,6,9-13C]prephenate, prepared respectively from [1,3,5,8-13C]chorismate and [2,6,9-13C]chorismate, aided the 13C NMR resonance assignments. Enzyme-bound prephenate exhibits remarkably different chemical shifts relative to free prephenate; the chemical shift changes range from -6.6 ppm for the C6 resonance to 5.6 ppm for the C5 resonance, suggesting a strong perturbation of the C5-C6 bond. 13C NMR studies of model compounds at various pH values and in various solvents suggest that the observed 13C chemical shift changes of enzyme-bound prephenate cannot be rationalized solely on the basis of changes in the pKas of the carboxylic acid groups or hydrophobic solvation at the active site.(ABSTRACT TRUNCATED AT 250 WORDS)
分支酸变位酶反应是一种由酶催化的罕见反应,即分支酸发生3,3 - 迁移重排生成预苯酸。采用对Gray等人(Gray, J. V., Grolinelli-Pimpaneau, B., & Knowles, J. R. (1990) Biochemistry 29, 376 - 383)方法的改进,从大肠杆菌XL1 - Blue (pBSCM2)中过量表达并纯化枯草芽孢杆菌分支酸变位酶;该改进使预苯酸脱水酶的污染活性降至最低(< 0.001%)。通过凝胶过滤测定枯草芽孢杆菌分支酸变位酶的天然分子量约为44 kDa,这表明其为由14.5 kDa亚基组成的同三聚体,此结果由电喷雾质谱法确定。采用13C核磁共振研究了结合在枯草芽孢杆菌分支酸变位酶活性位点的[U - 13C]预苯酸的结构。对[U - 13C]预苯酸所有与酶结合的13C核磁共振共振峰进行了归属,并在可能的情况下对1JC,Cs进行了定量;分别由[1,3,5,8 - 13C]分支酸和[2,6,9 - 13C]分支酸制备的[1,3,5,8 - 13C]预苯酸和[2,6,9 - 13C]预苯酸有助于13C核磁共振共振峰的归属。与游离预苯酸相比,与酶结合的预苯酸表现出显著不同的化学位移;化学位移变化范围从C6共振峰的 - 6.6 ppm到C5共振峰的5.6 ppm,这表明C5 - C6键受到强烈扰动。对处于不同pH值和不同溶剂中的模型化合物进行的13C核磁共振研究表明,观察到的与酶结合的预苯酸的13C化学位移变化不能仅基于活性位点羧酸基团pKa的变化或疏水溶剂化作用来解释。(摘要截短于250字)