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赖氨酸36被谷氨酸取代的突变型大肠杆菌硫氧还蛋白的晶体结构分析。

Crystal structure analysis of a mutant Escherichia coli thioredoxin in which lysine 36 is replaced by glutamic acid.

作者信息

Nikkola M, Gleason F K, Fuchs J A, Eklund H

机构信息

Department of Molecular Biology, Swedish University of Agricultural Sciences, Uppsala Biomedical Center.

出版信息

Biochemistry. 1993 May 18;32(19):5093-8. doi: 10.1021/bi00070a017.

Abstract

The structure of a mutant Escherichia coli thioredoxin with a glutamic acid substituted for a conserved lysine at position 36 adjacent to the active site has been solved using molecular replacement and refined at 2.0-A resolution to a crystallographic residual of 19.9%. The mutant was crystallized in an orthorhombic space group with one molecule in the asymmetric unit. The structure of the mutant thioredoxin shows overall good agreement with the wild-type E. coli thioredoxin. The root-mean-square deviations for all C alpha s are 0.45 and 0.79 A between the mutant structure and the two molecules in the asymmetric unit of the wild-type crystals. Structural changes are seen in several residues in the active-site region preceding the disulfide. A reverse turn of residues 29-32 changes the conformation from a type I to a type II turn. This change may be related to the loss of a hydrogen bond from Lys-36 to the main-chain carbonyl of residue 30 due to the mutation. The C alpha atom of Trp-31 has moved 1.9 A and the indole ring no longer makes hydrogen bonds to the carboxyl group of Asp-61 but instead participates in a crystal contact. The structural differences seen in the mutant thioredoxin may be influenced by the crystal packing. The substituted Glu-36 makes extensive crystal contacts. The static fluorescence of this mutant thioredoxin has a different pH dependence than the wild type.

摘要

利用分子置换法解析了一种突变型大肠杆菌硫氧还蛋白的结构,该蛋白在活性位点相邻的36位保守赖氨酸被谷氨酸取代,并在2.0埃分辨率下进行了精修,晶体学残余误差为19.9%。该突变体在正交晶系空间群中结晶,不对称单元中有一个分子。突变型硫氧还蛋白的结构与野生型大肠杆菌硫氧还蛋白总体上吻合良好。突变体结构与野生型晶体不对称单元中的两个分子之间所有Cα原子的均方根偏差分别为0.45和0.79埃。在二硫键之前的活性位点区域的几个残基中观察到结构变化。29 - 32位残基的一个反向转角将构象从I型转变为II型。这种变化可能与由于突变导致赖氨酸36与30位残基主链羰基之间氢键的丧失有关。色氨酸31的Cα原子移动了1.9埃,吲哚环不再与天冬氨酸61的羧基形成氢键,而是参与了晶体接触。突变型硫氧还蛋白中观察到的结构差异可能受晶体堆积的影响。取代的谷氨酸36形成了广泛的晶体接触。这种突变型硫氧还蛋白的静态荧光与野生型具有不同的pH依赖性。

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