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甲状腺转录因子1同源结构域的同源性模型构建

Homology model building of the thyroid transcription factor 1 homeodomain.

作者信息

Fogolari F, Esposito G, Viglino P, Damante G, Pastore A

机构信息

Dipartimento di Scienze e Tecnologie Biomediche, Facoltà di Medicina, Università di Udine, Italy.

出版信息

Protein Eng. 1993 Jul;6(5):513-9. doi: 10.1093/protein/6.5.513.

DOI:10.1093/protein/6.5.513
PMID:8105464
Abstract

A possible structure for the homeodomain of rat thyroid transcription factor 1 is proposed on the basis of the homology with other homeodomains whose structures have been solved by X-ray crystallography. A structure very similar to the reference ones is feasible and may account for the observed DNA-binding specificity. Structural features of the model, which are likely to be shared by other homeodomains, are discussed and may help researchers in the field to analyse their own experimental data.

摘要

基于与其他已通过X射线晶体学解析结构的同源异型结构域的同源性,提出了大鼠甲状腺转录因子1同源异型结构域的一种可能结构。一种与参考结构非常相似的结构是可行的,并且可以解释所观察到的DNA结合特异性。讨论了该模型的结构特征,这些特征可能为其他同源异型结构域所共有,可能有助于该领域的研究人员分析他们自己的实验数据。

相似文献

1
Homology model building of the thyroid transcription factor 1 homeodomain.甲状腺转录因子1同源结构域的同源性模型构建
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2
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Int J Biochem Cell Biol. 1999 Nov;31(11):1339-53. doi: 10.1016/s1357-2725(99)00047-3.
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Several regions of Antennapedia and thyroid transcription factor 1 homeodomains contribute to DNA binding specificity.触角足基因和甲状腺转录因子1同源结构域的几个区域对DNA结合特异性有贡献。
Proc Natl Acad Sci U S A. 1991 Jun 15;88(12):5388-92. doi: 10.1073/pnas.88.12.5388.
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Structural study of rat thyroid transcription factor 1 homeodomain (TTF-1 HD) by nuclear magnetic resonance.通过核磁共振对大鼠甲状腺转录因子1同源结构域(TTF-1 HD)进行结构研究。
FEBS Lett. 1993 Dec 28;336(3):397-402. doi: 10.1016/0014-5793(93)80845-l.
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The X-ray structure of an atypical homeodomain present in the rat liver transcription factor LFB1/HNF1 and implications for DNA binding.大鼠肝脏转录因子LFB1/HNF1中存在的非典型同源结构域的X射线结构及其对DNA结合的影响。
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EMBO J. 2000 Jun 1;19(11):2615-28. doi: 10.1093/emboj/19.11.2615.
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Solution structure of the HMG protein NHP6A and its interaction with DNA reveals the structural determinants for non-sequence-specific binding.HMG蛋白NHP6A的溶液结构及其与DNA的相互作用揭示了非序列特异性结合的结构决定因素。
EMBO J. 1999 May 4;18(9):2563-79. doi: 10.1093/emboj/18.9.2563.

引用本文的文献

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Hydrogen-deuterium exchange studies of the rat thyroid transcription factor 1 homeodomain.大鼠甲状腺转录因子1同源结构域的氢-氘交换研究
J Biomol NMR. 1997 Jun;9(4):397-407. doi: 10.1023/a:1018350611521.
2
Homology modeling using simulated annealing of restrained molecular dynamics and conformational search calculations with CONGEN: application in predicting the three-dimensional structure of murine homeodomain Msx-1.使用受限分子动力学的模拟退火和CONGEN构象搜索计算进行同源建模:在预测小鼠同源异型结构域Msx-1三维结构中的应用。
Protein Sci. 1997 May;6(5):956-70. doi: 10.1002/pro.5560060502.
3
A molecular code dictates sequence-specific DNA recognition by homeodomains.
一种分子编码决定了同源结构域对特定序列DNA的识别。
EMBO J. 1996 Sep 16;15(18):4992-5000.
4
Modeling of polypeptide chains as C alpha chains, C alpha chains with C beta, and C alpha chains with ellipsoidal lateral chains.将多肽链建模为仅含α-碳原子的链、含β-碳原子的α-碳原子链以及含椭球状侧链的α-碳原子链。
Biophys J. 1996 Mar;70(3):1183-97. doi: 10.1016/S0006-3495(96)79678-9.
5
Sequence-specific DNA recognition by the thyroid transcription factor-1 homeodomain.甲状腺转录因子-1同源结构域对序列特异性DNA的识别
Nucleic Acids Res. 1994 Aug 11;22(15):3075-83. doi: 10.1093/nar/22.15.3075.