Küster H, Perlick A M, Pühler A
Universität Bielefeld, Lehrstuhl für Genetik, Germany.
Plant Mol Biol. 1994 Jan;24(1):143-57. doi: 10.1007/BF00040581.
Five cross-hybridizing cDNAs from clone group 'VfNDS-L' of a broadbean nodule-specific cDNA library differed by five specific in-frame deletions within the coding region. Northern blot analysis revealed that the transcripts represented by these clones were expressed in a nodule-specific way and therefore encoded a new family of broadbean nodulins. These nodulins have been designated Nvf-28/32. The Nvf-28/32 proteins were between 269 and 299 amino acids long with a high proportion of charged amino acids and contained a putative signal peptide of 20 amino acids. Sequence analysis indicated that the central part of the Nvf-28/32 proteins was composed of two different types of repeating amino acid stretches designated 'repeat 1' and 'repeat 2', whereas the N- and C-termini were unique. In contrast to 'repeat 1' stretches, which contained both positively and negatively charged amino acid residues, 'repeat 2' sequences did not contain any positively, but a total of 13 negatively charged amino acid residues. We could demonstrate that the five deletions identified exactly corresponded to complete repeats. The unique sequence termini of the Nvf-28/32 proteins displayed strong homologies to the late nodulin 25 from alfalfa. In addition, the repeating units identified were significantly homologous to several, but not all exon parts of this protein. We speculate that the 'VfNDS-L' transcripts were derived from a differential splicing mechanism and that the Nvf-28/32 proteins fulfil a structural rather than an enzymatic function within the broadbean root nodule.
来自蚕豆根瘤特异性cDNA文库“VfNDS-L”克隆组的5个交叉杂交cDNA在编码区内有5个特定的框内缺失。Northern印迹分析表明,这些克隆所代表的转录本以根瘤特异性方式表达,因此编码了一个新的蚕豆根瘤素家族。这些根瘤素被命名为Nvf-28/32。Nvf-28/32蛋白长度在269至299个氨基酸之间,带电荷氨基酸比例较高,并含有一个20个氨基酸的假定信号肽。序列分析表明,Nvf-28/32蛋白的中央部分由两种不同类型的重复氨基酸序列组成,分别命名为“重复1”和“重复2”,而N端和C端是独特的。与同时含有带正电荷和负电荷氨基酸残基的“重复1”序列不同,“重复2”序列不包含任何带正电荷的氨基酸,但共有13个带负电荷的氨基酸残基。我们能够证明所鉴定的5个缺失恰好对应于完整的重复序列。Nvf-28/32蛋白独特的序列末端与苜蓿的晚期根瘤素25显示出很强的同源性。此外,所鉴定的重复单元与该蛋白的几个外显子部分有显著同源性,但并非全部。我们推测“VfNDS-L”转录本源自一种可变剪接机制,并且Nvf-28/32蛋白在蚕豆根瘤中发挥结构而非酶促功能。