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用三酯法制备寡脱氧核糖核苷磷酰二硫酯

Preparation of oligodeoxyribonucleoside phosphorodithioates by a triester method.

作者信息

Eldrup A B, Bjergårde K, Felding J, Kehler J, Dahl O

机构信息

Institute of Chemistry, H.C. Orsted Institute, University of Copenhagen, Denmark.

出版信息

Nucleic Acids Res. 1994 May 25;22(10):1797-804. doi: 10.1093/nar/22.10.1797.

DOI:10.1093/nar/22.10.1797
PMID:8208602
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC308076/
Abstract

A method to prepare thymidine phosphorodithioate dimers (ref. 1) has been extended to allow the preparation of oligo-2'-deoxyribonucleotide phosphorodithioates containing all four bases. The method is suitable for large-scale synthesis and gives phosphorodithioates without phosphorothioate impurities (31P nmr, detection limit 0.5 to 1%). Oligonucleotides up to octamers which contain -0-(PS2-)-0- linkages at all positions have been prepared by block synthesis in solution. The phosphorodithioate linkage is introduced by the reaction of a 5'-O, N-protected nucleoside (or oligonucleotide) with a dithiophosphorylating agent RSP(S)(ODhbt)2, R = 2,4-dichlorobenzyl, Dhbt = 3,4-dihydro-4-oxo-benzotriazin-3-yl, followed by coupling of the product to a 3'-O,N-protected nucleoside (or oligonucleotide). This method gives pure protected oligodeoxyribonucleoside phosphorodithioates, and phosphorothioate linkages are only introduced if contact with conc. aqueous ammonia during or after deblocking is unduly prolonged.

摘要

一种制备胸苷二硫代磷酸酯二聚体的方法(参考文献1)已得到扩展,可用于制备包含所有四种碱基的寡聚2'-脱氧核糖核苷酸二硫代磷酸酯。该方法适用于大规模合成,且得到的二硫代磷酸酯不含硫代磷酸酯杂质(31P核磁共振,检测限为0.5%至1%)。通过溶液中的片段合成法,已制备出在所有位置均含有-0-(PS2-)-0-键的八聚体寡核苷酸。二硫代磷酸酯键是通过5'-O,N-保护的核苷(或寡核苷酸)与二硫代磷酰化试剂RSP(S)(ODhbt)2反应引入的,其中R = 2,4-二氯苄基,Dhbt = 3,4-二氢-4-氧代-苯并三嗪-3-基,然后将产物与3'-O,N-保护的核苷(或寡核苷酸)偶联。该方法可得到纯的保护型寡脱氧核糖核苷二硫代磷酸酯,且只有在脱保护过程中或之后与浓氨水的接触时间过长时,才会引入硫代磷酸酯键。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d0d/308076/89a8948c5426/nar00034-0029-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d0d/308076/89a8948c5426/nar00034-0029-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d0d/308076/89a8948c5426/nar00034-0029-a.jpg

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本文引用的文献

1
Evaluation of some properties of a phosphorodithioate oligodeoxyribonucleotide for antisense application.用于反义应用的二硫代磷酸酯寡脱氧核糖核苷酸的某些性质评估。
Nucleic Acids Res. 1993 Dec 11;21(24):5761-6. doi: 10.1093/nar/21.24.5761.
2
Phosphorodithioate DNA as a potential therapeutic drug.二硫代磷酸酯DNA作为一种潜在的治疗药物。
Science. 1993 Mar 12;259(5101):1564-70. doi: 10.1126/science.7681216.
3
Synthesis and characterization of a substrate for T4 endonuclease V containing a phosphorodithioate linkage at the thymine dimer site.
含二硫代磷酸酯键的寡核苷酸类似物的高效固相合成。
Nucleic Acids Res. 2000 May 1;28(9):E40. doi: 10.1093/nar/28.9.e40.
4
Trinucleotide phosphoramidites: ideal reagents for the synthesis of mixed oligonucleotides for random mutagenesis.三核苷酸亚磷酰胺:用于合成随机诱变混合寡核苷酸的理想试剂。
Nucleic Acids Res. 1994 Dec 25;22(25):5600-7. doi: 10.1093/nar/22.25.5600.
5
Stability of oligodeoxynucleoside phosphorodithioates and phosphorothioates in aqueous ammonia.寡脱氧核苷磷酰二硫酯和硫代磷酸酯在氨水中的稳定性
Nucleic Acids Res. 1995 Aug 25;23(16):3349-50. doi: 10.1093/nar/23.16.3349.
在胸腺嘧啶二聚体位点含有二硫代磷酸酯键的T4核酸内切酶V底物的合成与表征。
Nucleic Acids Res. 1990 Dec 25;18(24):7279-86. doi: 10.1093/nar/18.24.7279.
4
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Nucleic Acids Res. 1991 Nov 11;19(21):5843-50. doi: 10.1093/nar/19.21.5843.
5
Synthesis and properties of oligonucleotides containing aminodeoxythymidine units.含氨基脱氧胸苷单元的寡核苷酸的合成与性质
Nucleic Acids Res. 1992 Jul 11;20(13):3403-9. doi: 10.1093/nar/20.13.3403.
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