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肽和蛋白质中β转角的圆二色性

Circular dichroism of beta turns in peptides and proteins.

作者信息

Bush C A, Sarkar S K, Kopple K D

出版信息

Biochemistry. 1978 Nov 14;17(23):4951-4. doi: 10.1021/bi00616a015.

Abstract

Circular dichroism (CD) spectra are reported for two groups of cyclic hexapeptides having beta turns whose geometry can be firmly established by X-ray crystallography and by NMR spectroscopy. One series contains the sequence L-Pro-D-Phe in the geometry of the classical type II beta turn, while the second group has the sequence D-Phe-L-Pro in the closely related geometry of the gramicidin S turn. CD data on the hydrogenated peptides show that in neither series do Cotton effects due to the aromatic phenylalanyl chromophore make a significant contribution to the spectra in the 195--240-nm region. In spite of the close geometric similarity of the beta turns of these two groups of peptides, their CD spectra are quite distinct. Furthermore, comparison of our data with the CD spectra of published models for beta-turn structures suggests that it may not be possible to characterize the contribution of all beta turns to the CD spectra of proteins by a single model curve. the CD spectra of model beta turns will be more useful in characterizing the folding of oligopeptides and sequence polypeptides, where a single type of turn is present.

摘要

报道了两组具有β-转角的环状六肽的圆二色性(CD)光谱,其几何结构可通过X射线晶体学和核磁共振光谱法得到确证。其中一组在经典II型β-转角几何结构中含有L-脯氨酸-D-苯丙氨酸序列,而第二组在短杆菌肽S型β-转角的紧密相关几何结构中含有D-苯丙氨酸-L-脯氨酸序列。氢化肽的CD数据表明,在这两个系列中,由于芳香族苯丙氨酰发色团产生的科顿效应在195 - 240nm区域的光谱中均未做出显著贡献。尽管这两组肽的β-转角在几何结构上非常相似,但它们的CD光谱却截然不同。此外,将我们的数据与已发表的β-转角结构模型的CD光谱进行比较表明,可能无法用单一的模型曲线来表征所有β-转角对蛋白质CD光谱的贡献。模型β-转角的CD光谱在表征存在单一类型转角的寡肽和序列多肽的折叠方面将更有用。

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