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本文引用的文献

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Interfacial free energy and the hydrophobic effect.界面自由能与疏水效应。
Proc Natl Acad Sci U S A. 1979 Sep;76(9):4175-6. doi: 10.1073/pnas.76.9.4175.
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Some factors in the interpretation of protein denaturation.蛋白质变性解读中的一些因素。
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Affinities of amino acid side chains for solvent water.氨基酸侧链与溶剂水的亲和性。
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Solvent accessible surface area and excluded volume in proteins. Analytical equations for overlapping spheres and implications for the hydrophobic effect.蛋白质中的溶剂可及表面积与排阻体积。重叠球体的解析方程及其对疏水效应的影响。
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The solubility of amino acids and two glycine peptides in aqueous ethanol and dioxane solutions. Establishment of a hydrophobicity scale.氨基酸和两种甘氨酸肽在乙醇水溶液和二氧六环溶液中的溶解度。疏水性标度的建立。
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The interpretation of protein structures: estimation of static accessibility.蛋白质结构的解读:静态可及性的评估
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The interpretation of protein structures: total volume, group volume distributions and packing density.蛋白质结构的阐释:总体积、基团体积分布及堆积密度
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Solvation energy in protein folding and binding.蛋白质折叠与结合中的溶剂化能。
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Theoretical and computational studies of hydrophobic interactions.
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源自小分子晶体形态的大分子溶剂化能。

Macromolecular solvation energies derived from small molecule crystal morphology.

作者信息

Rees D C, Wolfe G M

机构信息

Department of Chemistry and Biochemistry, University of California at Los Angeles 90024.

出版信息

Protein Sci. 1993 Nov;2(11):1882-9. doi: 10.1002/pro.5560021110.

DOI:10.1002/pro.5560021110
PMID:8268799
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2142285/
Abstract

The morphology of small molecule crystals provides a model for evaluating surface solvation energies in a system with similar packing density to that observed for amino acid residues in proteins. The solvation energies associated with the transfer of methylene and carboxyl groups between vacuum and aqueous phases are estimated to be approx. $40 and -260 cal/A2, respectively, from an analysis of the morphology of succinic acid crystals. These solvation energies predict values for contact angles in reasonable agreement with measurements determined from macroscopic monolayer surfaces. Transfer free energies between vapor and water phases for a series of carboxylic acids are also predicted reasonably well by these solvation energies, provided the surface exposure of different groups is quantitated with the molecular surface area rather than the more traditional accessible surface area. In general, molecular surfaces and molecular surface areas are seen to have important advantages for characterizing the structure and energetics of macromolecular surfaces. Crystal faces of succinic acid with the lowest surface energies in aqueous solution are characteristically smooth. Increasing surface roughness and apolarity are associated with higher surface energies, which suggests an approach for modifying the surface properties of proteins and other macromolecules.

摘要

小分子晶体的形态为评估一个与蛋白质中氨基酸残基堆积密度相似的系统中的表面溶剂化能提供了一个模型。通过对琥珀酸晶体形态的分析,估计在真空相和水相之间转移亚甲基和羧基时相关的溶剂化能分别约为40和 -260 cal/A²。这些溶剂化能预测的接触角值与从宏观单层表面测定的测量值相当吻合。对于一系列羧酸,这些溶剂化能对其在气相和水相之间的转移自由能也能进行合理预测,前提是不同基团的表面暴露用分子表面积而非更传统的可及表面积来定量。总体而言,分子表面和分子表面积在表征大分子表面的结构和能量方面具有重要优势。在水溶液中具有最低表面能的琥珀酸晶面通常是光滑的。表面粗糙度和非极性的增加与更高的表面能相关,这为修饰蛋白质和其他大分子的表面性质提供了一种方法。