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异位转录本结构中的异常情况:淋巴细胞肌营养不良蛋白转录本中的一个新外显子。

Infidelity in the structure of ectopic transcripts: a novel exon in lymphocyte dystrophin transcripts.

作者信息

Roberts R G, Bentley D R, Bobrow M

机构信息

Paediatric Research Unit, Guy's Hospital, London, England.

出版信息

Hum Mutat. 1993;2(4):293-9. doi: 10.1002/humu.1380020409.

DOI:10.1002/humu.1380020409
PMID:8401537
Abstract

Ectopic (or "illegitimate") transcripts have recently become popular as a means of facilitating the study of transcripts normally considered to have a pattern of expression restricted to one or a few tissues. It has been generally assumed that the structure of an ectopic transcript faithfully represents that of its tissue-specific counterpart. We describe here the inclusion of a novel exon in 50% of ectopic dystrophin transcripts from human peripheral blood lymphocytes. The novel sequence resembles a conserved region in the 3' untranslated region of members of the carcinoembryonic antigen gene family and lies within the first intron of the human dystrophin gene. This constitutes a significant departure from the expected in vivo splicing behaviour in an ectopic transcript and suggests that there may be exceptions to the assumption that ectopic transcripts are processed in a similar way to their tissue-specific counterparts.

摘要

异位(或“非法”)转录本最近作为一种促进对通常被认为表达模式局限于一个或几个组织的转录本进行研究的手段而受到欢迎。人们普遍认为,异位转录本的结构忠实地代表了其组织特异性对应物的结构。我们在此描述了在来自人外周血淋巴细胞的50%的异位肌营养不良蛋白转录本中包含一个新的外显子。该新序列类似于癌胚抗原基因家族成员3'非翻译区的一个保守区域,且位于人肌营养不良蛋白基因的第一个内含子内。这与异位转录本预期的体内剪接行为有显著差异,并表明异位转录本以与其组织特异性对应物类似的方式进行加工这一假设可能存在例外情况。

相似文献

1
Infidelity in the structure of ectopic transcripts: a novel exon in lymphocyte dystrophin transcripts.异位转录本结构中的异常情况:淋巴细胞肌营养不良蛋白转录本中的一个新外显子。
Hum Mutat. 1993;2(4):293-9. doi: 10.1002/humu.1380020409.
2
Identification of a novel first exon in the human dystrophin gene and of a new promoter located more than 500 kb upstream of the nearest known promoter.在人类肌营养不良蛋白基因中鉴定出一个新的首个外显子以及一个位于距离最近已知启动子上游超过500 kb处的新启动子。
J Clin Invest. 1994 Sep;94(3):1037-42. doi: 10.1172/JCI117417.
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A novel cryptic exon in intron 2 of the human dystrophin gene evolved from an intron by acquiring consensus sequences for splicing at different stages of anthropoid evolution.人类肌营养不良蛋白基因第2内含子中的一个新的隐蔽外显子是通过在类人猿进化的不同阶段获得剪接共有序列而从一个内含子进化而来的。
Biochem Biophys Res Commun. 2000 Jan 7;267(1):321-8. doi: 10.1006/bbrc.1999.1962.
4
Insertion of a 5' truncated L1 element into the 3' end of exon 44 of the dystrophin gene resulted in skipping of the exon during splicing in a case of Duchenne muscular dystrophy.在一例杜氏肌营养不良症中,一个5'端截短的L1元件插入到抗肌萎缩蛋白基因第44外显子的3'端,导致该外显子在剪接过程中发生跳跃。
J Clin Invest. 1993 May;91(5):1862-7. doi: 10.1172/JCI116402.
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Characterization of pathological dystrophin transcripts from the lymphocytes of a muscular dystrophy carrier.对一名肌营养不良携带者淋巴细胞中病理性抗肌萎缩蛋白转录本的表征。
Mol Biol Med. 1990 Dec;7(6):519-23.
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A case of Becker muscular dystrophy resulting from the skipping of four contiguous exons (71-74) of the dystrophin gene during mRNA maturation.一例由肌营养不良蛋白基因在mRNA成熟过程中四个相邻外显子(71-74)跳跃导致的贝克型肌营养不良症。
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Two alternative exons can result from activation of the cryptic splice acceptor site deep within intron 2 of the dystrophin gene in a patient with as yet asymptomatic dystrophinopathy.在一名尚无任何症状的肌营养不良症患者中,肌营养不良蛋白基因第2内含子深处的隐蔽剪接受体位点激活后,可产生两种可变外显子。
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Disruption of the splicing enhancer sequence within exon 27 of the dystrophin gene by a nonsense mutation induces partial skipping of the exon and is responsible for Becker muscular dystrophy.肌营养不良蛋白基因第27外显子内的剪接增强子序列因无义突变而破坏,导致该外显子部分跳跃,这是贝克型肌营养不良症的病因。
J Clin Invest. 1997 Nov 1;100(9):2204-10. doi: 10.1172/JCI119757.
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Towards a therapeutic inhibition of dystrophin exon 23 splicing in mdx mouse muscle induced by antisense oligoribonucleotides (splicomers): target sequence optimisation using oligonucleotide arrays.通过反义寡核糖核苷酸(剪接体)对mdx小鼠肌肉中抗肌萎缩蛋白外显子23剪接进行治疗性抑制:利用寡核苷酸阵列优化靶序列
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Illegitimate transcription. Application to the analysis of truncated transcripts of the dystrophin gene in nonmuscle cultured cells from Duchenne and Becker patients.非法转录。应用于对杜兴氏和贝克氏患者非肌肉培养细胞中肌营养不良蛋白基因截短转录本的分析。
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引用本文的文献

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Int J Mol Sci. 2020 Oct 21;21(20):7803. doi: 10.3390/ijms21207803.
2
Pseudoexons of the DMD Gene.假基因 DMD 基因。
J Neuromuscul Dis. 2020;7(2):77-95. doi: 10.3233/JND-190431.
3
Unraveling the effect of silent, intronic and missense mutations on splicing: contribution of next generation sequencing in the study of mRNA.解析沉默突变、内含子突变和错义突变对剪接的影响:下一代测序在 mRNA 研究中的贡献。
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Targeted RNA-Seq profiling of splicing pattern in the DMD gene: exons are mostly constitutively spliced in human skeletal muscle.靶向 RNA-Seq 分析 DMD 基因的剪接模式:人类骨骼肌中的外显子主要是组成性剪接的。
Sci Rep. 2017 Jan 3;7:39094. doi: 10.1038/srep39094.
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Neuronal SH-SY5Y cells use the C-dystrophin promoter coupled with exon 78 skipping and display multiple patterns of alternative splicing including two intronic insertion events.神经元 SH-SY5Y 细胞使用 C-肌营养不良蛋白启动子,与外显子 78 跳跃结合,并显示多种选择性剪接模式,包括两个内含子插入事件。
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