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枯草芽孢杆菌分支酸变位酶部分受扩散控制。

Bacillus subtilis chorismate mutase is partially diffusion-controlled.

作者信息

Mattei P, Kast P, Hilvert D

机构信息

Laboratorium für Organische Chemie, Swiss Federal Institute of Technology, Zürich, Switzerland.

出版信息

Eur J Biochem. 1999 Apr;261(1):25-32. doi: 10.1046/j.1432-1327.1999.00169.x.

Abstract

The effect of viscosogens on the enzyme-catalyzed rearrangement of chorismate to prephenate has been studied. The steady-state parameters kcat and kcat/Km for the monofunctional chorismate mutase from Bacillus subtilis (BsCM) decreased significantly with increasing concentrations of glycerol, whereas the 'sluggish' BsCM mutants C75A and C75S were insensitive to changes in microviscosity. The latter results rule out extraneous interactions of the viscosogen as an explanation for the effects observed with the wild-type enzyme. Additional control experiments show that neither viscosogen-induced shifts in the pH-dependence of the enzyme-catalyzed reaction nor small perturbations of the conformational equilibrium of chorismate can account for the observed effects. Instead, BsCM appears to be limited by substrate binding and product release at low and high substrate concentrations, respectively. Analysis of the kinetic data indicates that diffusive transition states are between 30 and 40% rate-determining in these concentration regimes; the chemical step must contribute to the remaining kinetic barrier. The relatively low value of the 'on' rates for chorismate and prephenate (approximately 2 x 106 m-1.s-1) probably reflects the need for a rare conformation of the enzyme, the ligand, or both for successful binding. Interestingly, the chorismate mutase domain of the bifunctional chorismate mutase-prephenate dehydratase from Escherichia coli, which has steady-state kinetic parameters comparable to those of BsCM but has a much less accessible active site, is insensitive to changes in viscosity and the reaction it catalyses is not diffusion-controlled.

摘要

研究了粘性原对分支酸向预苯酸酶催化重排反应的影响。枯草芽孢杆菌单功能分支酸变位酶(BsCM)的稳态参数kcat和kcat/Km随着甘油浓度的增加而显著降低,而“迟缓型”BsCM突变体C75A和C75S对微粘度变化不敏感。后一结果排除了粘性原的外部相互作用作为对野生型酶观察到的效应的解释。额外的对照实验表明,粘性原诱导的酶催化反应pH依赖性的变化以及分支酸构象平衡的微小扰动都不能解释观察到的效应。相反,BsCM在低底物浓度和高底物浓度下似乎分别受到底物结合和产物释放的限制。动力学数据分析表明,在这些浓度范围内,扩散过渡态在30%至40%的速率决定中起作用;化学步骤必定对剩余的动力学屏障有贡献。分支酸和预苯酸的“结合”速率相对较低(约2×106 m-1·s-1),这可能反映了需要酶、配体或两者的罕见构象才能成功结合。有趣的是,大肠杆菌双功能分支酸变位酶-预苯酸脱水酶的分支酸变位酶结构域,其稳态动力学参数与BsCM相当,但活性位点的可及性要低得多,对粘度变化不敏感,并且其催化的反应不受扩散控制。

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