• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

α动脉瘤:在葡萄球菌核酸酶插入突变体中揭示的一种结构基序。

The alpha aneurism: a structural motif revealed in an insertion mutant of staphylococcal nuclease.

作者信息

Keefe L J, Sondek J, Shortle D, Lattman E E

机构信息

Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205-2185.

出版信息

Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3275-9. doi: 10.1073/pnas.90.8.3275.

DOI:10.1073/pnas.90.8.3275
PMID:8475069
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC46282/
Abstract

The x-ray crystal structure of a mutant of staphylococcal nuclease that contains a single glycine residue inserted in the C-terminal alpha-helix has been solved to 1.67 A resolution and refined to a crystallographic R value of 0.170. This inserted glycine residue is accommodated in the alpha-helix by formation of a previously uncharacterized bulge, which we term the alpha aneurism. A conformational search of known protein structures has identified the alpha aneurism in a number of protein families, including the histocompatibility antigens and hemoglobins.

摘要

已解析出一种葡萄球菌核酸酶突变体的X射线晶体结构,该突变体在C端α螺旋中插入了一个甘氨酸残基,分辨率达到1.67 Å,并精修至晶体学R值为0.170。这个插入的甘氨酸残基通过形成一个以前未被表征的凸起(我们称之为α动脉瘤)容纳在α螺旋中。对已知蛋白质结构的构象搜索在许多蛋白质家族中发现了α动脉瘤,包括组织相容性抗原和血红蛋白。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac94/46282/93b6768d0ffc/pnas01467-0170-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac94/46282/180e43bdb063/pnas01467-0169-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac94/46282/6f08230d39c8/pnas01467-0169-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac94/46282/c84d472e3ccb/pnas01467-0169-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac94/46282/0a9a6c0bba20/pnas01467-0170-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac94/46282/93b6768d0ffc/pnas01467-0170-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac94/46282/180e43bdb063/pnas01467-0169-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac94/46282/6f08230d39c8/pnas01467-0169-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac94/46282/c84d472e3ccb/pnas01467-0169-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac94/46282/0a9a6c0bba20/pnas01467-0170-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac94/46282/93b6768d0ffc/pnas01467-0170-b.jpg

相似文献

1
The alpha aneurism: a structural motif revealed in an insertion mutant of staphylococcal nuclease.α动脉瘤:在葡萄球菌核酸酶插入突变体中揭示的一种结构基序。
Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3275-9. doi: 10.1073/pnas.90.8.3275.
2
Accommodation of insertion mutations on the surface and in the interior of staphylococcal nuclease.葡萄球菌核酸酶表面和内部插入突变的适应性
Protein Sci. 1994 Mar;3(3):391-401. doi: 10.1002/pro.5560030303.
3
Coupling between trans/cis proline isomerization and protein stability in staphylococcal nuclease.葡萄球菌核酸酶中反式/顺式脯氨酸异构化与蛋白质稳定性之间的偶联
Protein Sci. 1996 Sep;5(9):1907-16. doi: 10.1002/pro.5560050917.
4
Probing the subtle conformational state of N138ND2-Q106O hydrogen bonding deletion mutant (Asn138Asp) of staphylococcal nuclease using time of flight mass spectrometry with limited proteolysis.利用有限酶解飞行时间质谱探究葡萄球菌核酸酶N138ND2-Q106O氢键缺失突变体(Asn138Asp)的细微构象状态。
Arch Biochem Biophys. 2005 Feb 1;434(1):86-92. doi: 10.1016/j.abb.2004.10.011.
5
The crystal structure of staphylococcal nuclease refined at 1.7 A resolution.葡萄球菌核酸酶的晶体结构在1.7埃分辨率下得到优化。
Proteins. 1991;10(2):92-105. doi: 10.1002/prot.340100203.
6
In a staphylococcal nuclease mutant the side-chain of a lysine replacing valine 66 is fully buried in the hydrophobic core.在葡萄球菌核酸酶突变体中,取代缬氨酸66的赖氨酸侧链完全埋藏在疏水核心中。
J Mol Biol. 1991 Sep 5;221(1):7-14. doi: 10.1016/0022-2836(91)80195-z.
7
Structural and energetic differences between insertions and substitutions in staphylococcal nuclease.葡萄球菌核酸酶中插入与替换之间的结构和能量差异。
Proteins. 1992 Apr;13(2):132-40. doi: 10.1002/prot.340130206.
8
Engineering alternative beta-turn types in staphylococcal nuclease.工程改造葡萄球菌核酸酶中的替代β-转角类型。
Biochemistry. 1994 May 3;33(17):5021-30. doi: 10.1021/bi00183a004.
9
Solution structures of staphylococcal nuclease from multidimensional, multinuclear NMR: nuclease-H124L and its ternary complex with Ca2+ and thymidine-3',5'-bisphosphate.基于多维、多核核磁共振的葡萄球菌核酸酶溶液结构:核酸酶-H124L及其与Ca2+和胸腺嘧啶-3',5'-二磷酸的三元复合物
J Biomol NMR. 1997 Sep;10(2):143-64. doi: 10.1023/a:1018350004729.
10
Stability studies of amino acid substitutions at tyrosine 27 of the staphylococcal nuclease beta-barrel.葡萄球菌核酸酶β桶结构中酪氨酸27位点氨基酸取代的稳定性研究。
Biochemistry. 1997 Oct 7;36(40):12167-74. doi: 10.1021/bi970876r.

引用本文的文献

1
More than just pattern recognition: Prediction of uncommon protein structure features by AI methods.不仅仅是模式识别:人工智能方法预测罕见蛋白质结构特征。
Proc Natl Acad Sci U S A. 2023 Jul 11;120(28):e2221745120. doi: 10.1073/pnas.2221745120. Epub 2023 Jul 3.
2
The folding propensity of α/sulfono-γ-AA peptidic foldamers with both left- and right-handedness.具有左旋和右旋性的α/磺基-γ-氨基酸肽类折叠体的折叠倾向。
Commun Chem. 2021 May 10;4(1):58. doi: 10.1038/s42004-021-00496-0.
3
Local Backbone Geometry Plays a Critical Role in Determining Conformational Preferences of Amino Acid Residues in Proteins.

本文引用的文献

1
Crystallographic R factor refinement by molecular dynamics.利用分子动力学进行晶体学 R 因子精修。
Science. 1987 Jan 23;235(4787):458-60. doi: 10.1126/science.235.4787.458.
2
A high resolution structure of an inhibitor complex of the extracellular nuclease of Staphylococcus aureus. I. Experimental procedures and chain tracing.金黄色葡萄球菌细胞外核酸酶抑制剂复合物的高分辨率结构。I. 实验步骤和链追踪
J Biol Chem. 1971 Apr 10;246(7):2302-16.
3
The structure of manganese superoxide dismutase from Thermus thermophilus HB8 at 2.4-A resolution.
局部骨架几何形状在决定蛋白质中氨基酸残基的构象偏好方面起着关键作用。
Biomolecules. 2022 Aug 26;12(9):1184. doi: 10.3390/biom12091184.
4
The Structural Biology of Septins and Their Filaments: An Update.Septins及其丝状结构的结构生物学:最新进展
Front Cell Dev Biol. 2021 Nov 19;9:765085. doi: 10.3389/fcell.2021.765085. eCollection 2021.
5
Fungal-Selective Resorcylate Aminopyrazole Hsp90 Inhibitors: Optimization of Whole-Cell Anticryptococcal Activity and Insights into the Structural Origins of Cryptococcal Selectivity.真菌选择性的间苯二酚氨吡唑 Hsp90 抑制剂:全细胞抗隐球菌活性的优化及隐球菌选择性的结构起源研究。
J Med Chem. 2021 Jan 28;64(2):1139-1169. doi: 10.1021/acs.jmedchem.0c01777. Epub 2021 Jan 14.
6
Deoxycholate-Enhanced Shigella Virulence Is Regulated by a Rare π-Helix in the Type Three Secretion System Tip Protein IpaD.脱氧胆酸盐增强的志贺氏菌毒力受三型分泌系统尖端蛋白IpaD中一个罕见π螺旋的调控。
Biochemistry. 2017 Dec 12;56(49):6503-6514. doi: 10.1021/acs.biochem.7b00836. Epub 2017 Nov 22.
7
Unique Structural Features of Membrane-Bound C-Terminal Domain Motifs Modulate Complexin Inhibitory Function.膜结合C末端结构域基序的独特结构特征调节突触结合蛋白的抑制功能。
Front Mol Neurosci. 2017 May 24;10:154. doi: 10.3389/fnmol.2017.00154. eCollection 2017.
8
Filaments and fingers: Novel structural aspects of the single septin from .细丝与指状结构:来自……的单个septin的新结构特征 。 需注意,原文中“from.”后面似乎缺失了具体信息。
J Biol Chem. 2017 Jun 30;292(26):10899-10911. doi: 10.1074/jbc.M116.762229. Epub 2017 May 5.
9
The accommodation index measures the perturbation associated with insertions and deletions in coiled-coils: Application to understand signaling in histidine kinases.适应性指数衡量与卷曲螺旋中插入和缺失相关的扰动:用于理解组氨酸激酶中的信号传导。
Protein Sci. 2017 Mar;26(3):414-435. doi: 10.1002/pro.3095. Epub 2017 Feb 23.
10
Fluctuations of an exposed π-helix involved in lipoxygenase substrate recognition.参与脂氧合酶底物识别的暴露π-螺旋的波动。
Biochemistry. 2014 Aug 12;53(31):5102-10. doi: 10.1021/bi500768c. Epub 2014 Jul 29.
嗜热栖热菌HB8来源的锰超氧化物歧化酶在2.4埃分辨率下的结构
J Biol Chem. 1985 Dec 25;260(30):16424-32.
4
Helix signals in proteins.蛋白质中的螺旋信号。
Science. 1988 Jun 17;240(4859):1632-41. doi: 10.1126/science.2837824.
5
The crystal structure of the ternary complex of staphylococcal nuclease, Ca2+, and the inhibitor pdTp, refined at 1.65 A.葡萄球菌核酸酶、Ca2+与抑制剂pdTp三元复合物的晶体结构,在1.65埃分辨率下进行了精修。
Proteins. 1989;5(3):183-201. doi: 10.1002/prot.340050302.
6
Specificity pockets for the side chains of peptide antigens in HLA-Aw68.HLA-Aw68中肽抗原侧链的特异性口袋
Nature. 1989 Dec 7;342(6250):692-6. doi: 10.1038/342692a0.
7
Accommodation of single amino acid insertions by the native state of staphylococcal nuclease.葡萄球菌核酸酶天然状态对单个氨基酸插入的容纳情况
Proteins. 1990;7(4):299-305. doi: 10.1002/prot.340070402.
8
Structural and energetic differences between insertions and substitutions in staphylococcal nuclease.葡萄球菌核酸酶中插入与替换之间的结构和能量差异。
Proteins. 1992 Apr;13(2):132-40. doi: 10.1002/prot.340130206.
9
A general strategy for random insertion and substitution mutagenesis: substoichiometric coupling of trinucleotide phosphoramidites.随机插入和取代诱变的通用策略:三核苷酸亚磷酰胺的亚化学计量偶联
Proc Natl Acad Sci U S A. 1992 Apr 15;89(8):3581-5. doi: 10.1073/pnas.89.8.3581.
10
Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect.蛋白质结构对产生空腔突变的响应及其与疏水效应的关系。
Science. 1992 Jan 10;255(5041):178-83. doi: 10.1126/science.1553543.