Nakamura H
Protein Engineering Research Institute, Osaka, Japan.
J Mol Graph. 1993 Mar;11(1):30-6, 43. doi: 10.1016/0263-7855(93)85004-a.
A general algorithm based on the Green function theorem has been developed to correctly reproduce electrostatic fields inside a closed space by point charges and point dipoles on the surface surrounding the space. For actual computations, limited numbers of point charges, including charge pairs replacing point dipoles, are enough to approximate the inner fields. As examples, reaction fields were reproduced by the current surface charges and dipoles for the dielectric models, where a monopole, dipole, or quadrupole was individually set at the center in a vacuum sphere surrounded by high dielectric continuum. The potentials due to those reaction fields agree well with the analytical ones. As an application of this method to the analysis of the electronic structure of the active site of a protein, a combination of the continuum dielectric model and ab initio molecular orbital calculation was carried out. Other applications to molecular dynamics and quantum mechanical calculations are also discussed.
一种基于格林函数定理的通用算法已被开发出来,用于通过封闭空间周围表面上的点电荷和点偶极子正确再现封闭空间内的静电场。对于实际计算,包括取代点偶极子的电荷对在内的有限数量的点电荷足以近似内部场。作为示例,对于介电模型,通过当前的表面电荷和偶极子再现了反应场,其中在由高介电常数连续介质包围的真空球的中心单独设置了单极子、偶极子或四极子。这些反应场产生的电势与解析电势非常吻合。作为该方法在蛋白质活性位点电子结构分析中的应用,进行了连续介质介电模型和从头算分子轨道计算的结合。还讨论了该方法在分子动力学和量子力学计算中的其他应用。