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1
Primary structure and phylogeny of the Calvin cycle enzymes transketolase and fructosebisphosphate aldolase of Xanthobacter flavus.黄杆菌卡尔文循环酶转酮醇酶和果糖二磷酸醛缩酶的一级结构与系统发育
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2
Structure of ribulose 1,5-bisphosphate carboxylase/oxygenase gene cluster from a thermophilic hydrogen-oxidizing bacterium, Hydrogenophilus thermoluteolus, and phylogeny of the fructose 1,6-bisphosphate aldolase encoded by cbbA in the cluster.嗜热氢氧化细菌嗜热栖热菌中核酮糖-1,5-二磷酸羧化酶/加氧酶基因簇的结构以及该基因簇中由cbbA编码的果糖-1,6-二磷酸醛缩酶的系统发育
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3
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4
The Calvin cycle enzyme phosphoglycerate kinase of Xanthobacter flavus required for autotrophic CO2 fixation is not encoded by the cbb operon.黄杆菌自养固定二氧化碳所需的卡尔文循环酶磷酸甘油酸激酶不是由cbb操纵子编码的。
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Molecular evolution of amphioxus fructose-1,6-bisphosphate aldolase.文昌鱼果糖-1,6-二磷酸醛缩酶的分子进化
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Xanthobacter flavus employs a single triosephosphate isomerase for heterotrophic and autotrophic metabolism.黄杆菌利用单一的磷酸丙糖异构酶进行异养和自养代谢。
Microbiology (Reading). 1997 Jun;143 ( Pt 6):1925-1931. doi: 10.1099/00221287-143-6-1925.

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Effects of the Calvin cycle on nicotinamide adenine dinucleotide concentrations and redox balances of Xanthobacter flavus.卡尔文循环对黄杆菌烟酰胺腺嘌呤二核苷酸浓度和氧化还原平衡的影响。
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本文引用的文献

1
Role of Aldolase in Photosynthesis. II Demonstration of Aldolase Types in Photosynthetic Organisms.醛缩酶在光合作用中的作用。II. 光合生物中醛缩酶类型的证明。
Plant Physiol. 1968 May;43(5):793-8. doi: 10.1104/pp.43.5.793.
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MINIATURE escherichia coli CELLS DEFICIENT IN DNA.DNA缺陷的微小大肠杆菌细胞
Proc Natl Acad Sci U S A. 1967 Feb;57(2):321-6. doi: 10.1073/pnas.57.2.321.
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A thiamine pyrophosphate-glycoaldehyde compound ("active glycolaldehyde") as intermediate in the transketolase reaction.一种硫胺素焦磷酸-乙醇醛化合物（“活性乙醇醛”）作为转酮醇酶反应中的中间体。
Biochem Biophys Res Commun. 1962 Apr 3;7:167-72. doi: 10.1016/0006-291x(62)90168-7.
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Plastid Class I and Cytosol Class II Aldolase of Euglena gracilis (Purification and Characterization).纤细裸藻的质体I类和胞质II类醛缩酶（纯化与特性鉴定）
Plant Physiol. 1994 Nov;106(3):1137-1144. doi: 10.1104/pp.106.3.1137.
5
Cloning of human transketolase cDNAs and comparison of the nucleotide sequence of the coding region in Wernicke-Korsakoff and non-Wernicke-Korsakoff individuals.人转酮醇酶cDNA的克隆以及韦尼克-科尔萨科夫综合征患者与非韦尼克-科尔萨科夫综合征患者编码区核苷酸序列的比较。
J Biol Chem. 1993 Jan 15;268(2):1397-404.
6
CbbR, a LysR-type transcriptional activator, is required for expression of the autotrophic CO2 fixation enzymes of Xanthobacter flavus.CbbR是一种LysR型转录激活因子，是黄杆菌自养二氧化碳固定酶表达所必需的。
J Bacteriol. 1993 Oct;175(19):6097-104. doi: 10.1128/jb.175.19.6097-6104.1993.
7
Complementation analysis and regulation of CO2 fixation gene expression in a ribulose 1,5-bisphosphate carboxylase-oxygenase deletion strain of Rhodospirillum rubrum.红螺菌核糖-1,5-二磷酸羧化酶-加氧酶缺失菌株中二氧化碳固定基因表达的互补分析与调控
J Bacteriol. 1993 Aug;175(16):5066-77. doi: 10.1128/jb.175.16.5066-5077.1993.
8
Molecular cloning and nucleotide sequencing of Schizosaccharomyces pombe homologue of the class II fructose-1,6-bisphosphate aldolase gene.粟酒裂殖酵母II类果糖-1,6-二磷酸醛缩酶基因同源物的分子克隆与核苷酸测序
Biochim Biophys Acta. 1994 Jan 4;1183(3):550-2. doi: 10.1016/0005-2728(94)90084-1.
9
The cbb operons of the facultative chemoautotroph Alcaligenes eutrophus encode phosphoglycolate phosphatase.兼性化能自养菌嗜糖产碱菌的cbb操纵子编码磷酸乙醇酸磷酸酶。
J Bacteriol. 1993 Nov;175(22):7329-40. doi: 10.1128/jb.175.22.7329-7340.1993.
10
Relative efficiencies of the maximum likelihood, maximum parsimony, and neighbor-joining methods for estimating protein phylogeny.用于估计蛋白质系统发育的最大似然法、最大简约法和邻接法的相对效率。
Mol Phylogenet Evol. 1993 Mar;2(1):1-5. doi: 10.1006/mpev.1993.1001.

黄杆菌卡尔文循环酶转酮醇酶和果糖二磷酸醛缩酶的一级结构与系统发育

Primary structure and phylogeny of the Calvin cycle enzymes transketolase and fructosebisphosphate aldolase of Xanthobacter flavus.

作者信息

van den Bergh E R, Baker S C, Raggers R J, Terpstra P, Woudstra E C, Dijkhuizen L, Meijer W G

机构信息

Department of Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute (GBB), University of Groningen, NN Haren, The Netherlands.

出版信息

J Bacteriol. 1996 Feb;178(3):888-93. doi: 10.1128/jb.178.3.888-893.1996.

DOI:10.1128/jb.178.3.888-893.1996
PMID:8550527
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC177739/
Abstract

Xanthobacter flavus, a gram-negative facultatively autotrophic bacterium, employs the Calvin cycle for the fixation of carbon dioxide. Cells grown under autotrophic growth conditions possess an Fe(2+)-dependent fructosebisphosphate (FBP) aldolase (class II) in addition to a class I FBP aldolase. By nucleotide sequencing and heterologous expression in Escherichia coli, genes encoding transketolase (EC 2.2.1.1.; CbbT) and class II FBP aldolase (EC 4.1.2.13; CbbA) were identified. A partial open reading frame encoding a protein similar to pentose-5-phosphate 3-epimerase was identified downstream from cbbA. A phylogenetic tree of transketolase proteins displays a conventional branching order. However, the class II FBP aldolase protein from X. flavus is only distantly related to that of E. coli. The autotrophic FBP aldolase proteins from X. flavus, Alcaligenes eutrophus, and Rhodobacter sphaeroides form a tight cluster, with the proteins from gram-positive bacteria as the closest relatives.

摘要

黄杆菌属黄杆菌，一种革兰氏阴性兼性自养细菌，利用卡尔文循环固定二氧化碳。在自养生长条件下生长的细胞除了具有I类果糖二磷酸（FBP）醛缩酶外，还拥有一种铁（2+）依赖性果糖二磷酸（FBP）醛缩酶（II类）。通过核苷酸测序和在大肠杆菌中的异源表达，鉴定出了编码转酮醇酶（EC 2.2.1.1；CbbT）和II类FBP醛缩酶（EC 4.1.2.13；CbbA）的基因。在cbbA下游鉴定出了一个部分开放阅读框，其编码一种与戊糖-5-磷酸3-差向异构酶相似的蛋白质。转酮醇酶蛋白的系统发育树显示出传统的分支顺序。然而，黄杆菌属的II类FBP醛缩酶蛋白与大肠杆菌的该蛋白只有远缘关系。来自黄杆菌属、真养产碱菌和球形红杆菌的自养FBP醛缩酶蛋白形成一个紧密的簇，革兰氏阳性细菌的蛋白是其最亲近的亲属。