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TRANSFAC：一个关于转录因子及其DNA结合位点的数据库。

TRANSFAC: a database on transcription factors and their DNA binding sites.

作者信息

Wingender E, Dietze P, Karas H, Knüppel R

机构信息

Gesellschaft für Biotechnologische Forschung mbH, Department of GenomeAnalysis, Braunschweig, Germany.

出版信息

Nucleic Acids Res. 1996 Jan 1;24(1):238-41. doi: 10.1093/nar/24.1.238.

DOI:10.1093/nar/24.1.238
PMID:8594589
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC145586/
Abstract

TRANSFAC is a database about eukaryotic transcription regulating DNA sequence elements and the transcription factors binding to and acting through them. This report summarizes the present status of this database and accompanying retrieval tools.

摘要

TRANSFAC是一个关于真核生物转录调控DNA序列元件以及与之结合并通过它们发挥作用的转录因子的数据库。本报告总结了该数据库及其配套检索工具的现状。

相似文献

1
TRANSFAC: a database on transcription factors and their DNA binding sites.TRANSFAC：一个关于转录因子及其DNA结合位点的数据库。
Nucleic Acids Res. 1996 Jan 1;24(1):238-41. doi: 10.1093/nar/24.1.238.
2
TRANSFAC database as a bridge between sequence data libraries and biological function.TRANSFAC数据库作为序列数据库与生物学功能之间的桥梁。
Pac Symp Biocomput. 1997:477-85.
3
Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms.将TRANSFAC数据库扩展为调控分子机制专家系统。
Nucleic Acids Res. 1999 Jan 1;27(1):318-22. doi: 10.1093/nar/27.1.318.
4
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL.转录调控数据库：TRANSFAC、TRRD和COMPEL。
Nucleic Acids Res. 1998 Jan 1;26(1):362-7. doi: 10.1093/nar/26.1.362.
5
TRANSFAC retrieval program: a network model database of eukaryotic transcription regulating sequences and proteins.TRANSFAC检索程序：真核生物转录调控序列和蛋白质的网络模型数据库。
J Comput Biol. 1994 Fall;1(3):191-8. doi: 10.1089/cmb.1994.1.191.
6
The TRANSFAC system on gene expression regulation.关于基因表达调控的TRANSFAC系统。
Nucleic Acids Res. 2001 Jan 1;29(1):281-3. doi: 10.1093/nar/29.1.281.
7
Improvement of TRANSFAC matrices using multiple local alignment of transcription factor binding site sequences.利用转录因子结合位点序列的多重局部比对改进TRANSFAC矩阵。
Genome Inform. 2005;16(1):68-72.
8
Database-assisted promoter analysis.数据库辅助的启动子分析
Trends Plant Sci. 2001 Jun;6(6):251-5. doi: 10.1016/s1360-1385(01)01954-9.
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Computer tool FUNSITE for analysis of eukaryotic regulatory genomic sequences.用于分析真核生物调控基因组序列的计算机工具FUNSITE
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Nucleic Acids Res. 2002 Nov 1;30(21):e121. doi: 10.1093/nar/gnf120.

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本文引用的文献

1
TRANSFAC retrieval program: a network model database of eukaryotic transcription regulating sequences and proteins.TRANSFAC检索程序：真核生物转录调控序列和蛋白质的网络模型数据库。
J Comput Biol. 1994 Fall;1(3):191-8. doi: 10.1089/cmb.1994.1.191.
2
MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data.MatInd和MatInspector：用于检测核苷酸序列数据中共有匹配的新型快速通用工具。
Nucleic Acids Res. 1995 Dec 11;23(23):4878-84. doi: 10.1093/nar/23.23.4878.
3
Computer-assisted prediction, classification, and delimitation of protein binding sites in nucleic acids.计算机辅助预测、分类及界定核酸中的蛋白质结合位点
Nucleic Acids Res. 1993 Apr 11;21(7):1655-64. doi: 10.1093/nar/21.7.1655.
4
Transforming a set of biological flat file libraries to a fast access network.将一组生物平面文件库转换为快速访问网络。
Comput Appl Biosci. 1993 Feb;9(1):59-64. doi: 10.1093/bioinformatics/9.1.59.
5
SRS--an indexing and retrieval tool for flat file data libraries.SRS——一种用于平面文件数据库的索引和检索工具。
Comput Appl Biosci. 1993 Feb;9(1):49-57. doi: 10.1093/bioinformatics/9.1.49.
6
Status of the transcription factors database (TFD).转录因子数据库（TFD）的状态。
Nucleic Acids Res. 1993 Jul 1;21(13):3117-8. doi: 10.1093/nar/21.13.3117.
7
Recognition of regulatory regions in genomic sequences.基因组序列中调控区域的识别。
J Biotechnol. 1994 Jun 30;35(2-3):273-80. doi: 10.1016/0168-1656(94)90041-8.
8
A compilation of composite regulatory elements affecting gene transcription in vertebrates.影响脊椎动物基因转录的复合调控元件汇编。
Nucleic Acids Res. 1995 Oct 25;23(20):4097-103. doi: 10.1093/nar/23.20.4097.
9
Compilation of transcription regulating proteins.转录调节蛋白的汇编
Nucleic Acids Res. 1988 Mar 25;16(5):1879-902. doi: 10.1093/nar/16.5.1879.
10
Eukaryotic transcriptional regulatory proteins.真核转录调节蛋白。
Annu Rev Biochem. 1989;58:799-839. doi: 10.1146/annurev.bi.58.070189.004055.