Suppr超能文献

实验误差对根据瞬态代谢物浓度确定通量控制系数的影响。

Influence of experimental errors on the determination of flux control coefficients from transient metabolite concentrations.

作者信息

Ehlde M, Zacchi G

机构信息

Department of Chemical Engineering 1, University of Lund, Sweden.

出版信息

Biochem J. 1996 Feb 1;313 ( Pt 3)(Pt 3):721-7. doi: 10.1042/bj3130721.

Abstract

The influence of experimental errors on the determination of flux control coefficients from transient metabolite concentrations with the method proposed by Delgado and Liao [(1992) Biochem. J. 282, 919-927] has been investigated by using Monte Carlo simulations. The method requires least-squares fitting of the transient metabolite concentrations. Three different fitting methods have been evaluated. Simulated metabolite concentrations of a fictive metabolic pathway were scattered randomly, emulating experimental errors, before performing the fits. This was repeated a large number of times; the mean values and standard deviations of the resulting control coefficients are reported. The results show that the proposed method for determining control coefficients is too sensitive to experimental errors to be practicable, with theoretically justified fitting methods. This is in particular due to the high degree of correlation between the concentrations. An alternative ad hoc fitting method produced biased mean values of the estimates of the control coefficients, but with remarkably low standard deviations.

摘要

通过蒙特卡罗模拟研究了实验误差对采用德尔加多和廖提出的方法([1992]《生物化学杂志》282卷,919 - 927页)根据瞬态代谢物浓度确定通量控制系数的影响。该方法需要对瞬态代谢物浓度进行最小二乘拟合。评估了三种不同的拟合方法。在进行拟合之前,对虚构代谢途径的模拟代谢物浓度进行随机散布,模拟实验误差。重复此操作大量次数;报告所得控制系数的平均值和标准差。结果表明,所提出的确定控制系数的方法对实验误差过于敏感,以至于在采用理论上合理的拟合方法时不实用。这尤其归因于浓度之间的高度相关性。一种替代的临时拟合方法产生了控制系数估计值的有偏差平均值,但标准差显著较低。

相似文献

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验