Adediran S A, Deraniyagala S A, Xu Y, Pratt R F
Department of Chemistry, Wesleyan University, Middletown, Connecticut 06459, USA.
Biochemistry. 1996 Mar 19;35(11):3604-13. doi: 10.1021/bi952107i.
Beta-Secondary and solvent deuterium kinetic isotope effects have been determined for the steady-state kinetic parameters V/K and V for turnover of a depsipeptide substrate, m-[[(phenylacetyl)glycyl]-oxy]benzoic acid, and of a beta-lactam substrate, penicillanic acid, by three typical class A beta-lactamases and a class C beta-lactamase. The isotope effects on alkaline hydrolysis of these substrates have been used as a frame of reference. The effect of the transition state conformation of the substrates in determining the beta-secondary isotope effects has been explicitly considered. The inverse beta-secondary isotope effects on both V/K and V for the class A enzymes with both substrates indicate transition states where the carbonyl group of the scissile bond has become tetrahedral and therefore reflect typical acyl-transfer transition states. The solvent isotope effects indicate that enzyme deacylation (as reflected in V for the Staphylococcus aureus PC1 beta-lactamase) may be a classical general-base-catalyzed hydrolysis but that there is little proton motion in the enzyme acylation transition state (as revealed by V/K) for the TEM beta-lactamase and Bacillus cereus beta-lactamase I. These results provide kinetic support for the conjecture made on structural grounds that class A beta-lactamases employ an asymmetric double-displacement mechanism. The isotope effects on V/K for the class C beta-lactamase of Enterobacter cloacae P99 suggest an acyl-transfer transition state for the penicillin, although, as for the class A enzymes, without significant proton motion. On the other hand, the V/K transition state for depsipeptide does not seem to involve covalent chemistry. Suggestive of this conclusion are the measured beta-secondary isotope effect of 1,002 +/- 0.012 and the inverse solvent isotope effect. These results provide an example of a significant difference between the kinetics of turnover of a beta-lactam and a depsipeptide by a beta-lactamase. The V transition state for both substrates with the P99 beta-lactamase probably involves acyl-transfer (deacylation) where the conformation of the acyl-enzyme is closely restricted. The conformations of acyl-enzymes of the PC1 and P99 beta-lactamases correlate to the (different) dispositions of general base catalysts at their active sites.
已经测定了三种典型的A类β-内酰胺酶和一种C类β-内酰胺酶催化环肽底物间位[[(苯乙酰基)甘氨酰]氧基]苯甲酸以及β-内酰胺底物青霉烷酸周转时,稳态动力学参数V/K和V的β-二级及溶剂氘动力学同位素效应。这些底物碱性水解的同位素效应被用作参考标准。明确考虑了底物过渡态构象在决定β-二级同位素效应中的作用。对于这两种底物,A类酶对V/K和V的反向β-二级同位素效应表明,断裂键的羰基已变为四面体的过渡态,因此反映了典型的酰基转移过渡态。溶剂同位素效应表明,酶的脱酰作用(如金黄色葡萄球菌PC1β-内酰胺酶的V所反映)可能是典型的一般碱催化水解,但对于TEMβ-内酰胺酶和蜡样芽孢杆菌β-内酰胺酶I,在酶酰化过渡态(由V/K揭示)中几乎没有质子移动。这些结果为基于结构理由做出的A类β-内酰胺酶采用不对称双位移机制的推测提供了动力学支持。阴沟肠杆菌P99的C类β-内酰胺酶对V/K的同位素效应表明青霉素存在酰基转移过渡态,不过,与A类酶一样,没有明显的质子移动。另一方面,环肽的V/K过渡态似乎不涉及共价化学。测得的1.002±0.012的β-二级同位素效应和反向溶剂同位素效应表明了这一结论。这些结果提供了一个β-内酰胺酶催化β-内酰胺和环肽周转动力学存在显著差异的例子。P99β-内酰胺酶催化这两种底物时的V过渡态可能涉及酰基转移(脱酰作用),此时酰基酶的构象受到严格限制。PC1和P99β-内酰胺酶的酰基酶构象与其活性位点上一般碱催化剂的(不同)分布相关。