Xiao G, Liu S, Ji X, Johnson W W, Chen J, Parsons J F, Stevens W J, Gilliland G L, Armstrong R N
Department of Chemistry and Biochemistry, University of Maryland, College Park, Md, 20742, USA.
Biochemistry. 1996 Apr 16;35(15):4753-65. doi: 10.1021/bi960189k.
The activation of the thiol of glutathione (GSH) bound in the active site of the class mu glutathione transferase M1-1 from rat involves a hydrogen-bonding network that includes a direct (first-sphere) interaction between the hydroxyl group of Y6 and the sulfur of GSH and second-sphere interactions involving a hydrogen bond between the main-chain amide N-H of L12 and the hydroxyl group of Y6 and an on-face hydrogen bond between the hydroxyl group of T13 and the pi-electron cloud of Y6 (i.e., T13-OH---pi-Y6-OH--- -SG). The functions of these hydrogen bonds have been examined with a combination of site-specific mutagenesis and X-ray crystallography. The hydroxyl group of Y6 has a normal pKa of about 10 even though it is shielded from solvent and is in a largely hydrophobic environment. The apparent pKa of GSH in the binary Y6F.GSH complex is increased by 1.6 log units, and the reactivity of the enzyme-bound nucleophile is reduced. The catalytic properties of the Y6L mutant are identical to those of Y6F, suggesting that the weakly polar on-edge interaction between the aromatic ring and sulfur has no influence on catalysis. The refined three-dimensional structure of the Y6F mutant in complex with GSH shows no major structural perturbation of the protein other than a change in the coordination environment of the sulfur. Removal of the second-sphere influence of the on-face hydrogen bond between the hydroxyl groups T13 as in the T13V and T13A mutants elevates the pKa of enzyme-bound GSH by about 0.7 pKa units. Crystal structures of these mutants show that structural changes in the active site are minor and suggest that the changes in pKa of E.GSH are due to the presence or absence of the on-face hydrogen bond. The T13S mutant has a completely different side-chain hydrogen-bonding geometry than T13 in the native enzyme and catalytic properties similar to the T13A and T13V mutants consistent with the absence of an on-face hydrogen bond. The gamma-methyl group of T13 is essential in enforcing the on-face hydrogen bond geometry and preventing the hydroxyl group from forming more favorable conventional hydrogen bonds.
大鼠μ类谷胱甘肽转移酶M1-1活性位点中结合的谷胱甘肽(GSH)的硫醇激活涉及一个氢键网络,该网络包括Y6的羟基与GSH的硫之间的直接(第一球层)相互作用,以及第二球层相互作用,其中包括L12的主链酰胺N-H与Y6的羟基之间的氢键以及T13的羟基与Y6的π电子云之间的面内氢键(即,T13-OH---π-Y6-OH--- -SG)。已通过定点诱变和X射线晶体学相结合的方法研究了这些氢键的功能。尽管Y6的羟基与溶剂隔离且处于主要为疏水的环境中,但其正常pKa约为10。在二元Y6F.GSH复合物中,GSH的表观pKa增加了1.6个对数单位,并且酶结合亲核试剂的反应性降低。Y6L突变体的催化特性与Y6F相同,表明芳香环与硫之间的弱极性边缘相互作用对催化没有影响。与GSH复合的Y6F突变体的精制三维结构显示,除了硫的配位环境发生变化外,蛋白质没有重大结构扰动。如T13V和T13A突变体那样,去除T13羟基之间面内氢键的第二球层影响会使酶结合的GSH的pKa升高约0.7个pKa单位。这些突变体的晶体结构表明活性位点的结构变化很小,并表明E.GSH的pKa变化是由于面内氢键的存在或不存在。T13S突变体具有与天然酶中T13完全不同的侧链氢键几何结构,并且催化特性与T13A和T13V突变体相似,这与不存在面内氢键一致。T13的γ-甲基对于加强面内氢键几何结构并防止羟基形成更有利的传统氢键至关重要。