Kim S I, Nalaskowska M, Germond J E, Pridmore D, Söll D
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520-8114, USA.
Nucleic Acids Res. 1996 Jul 15;24(14):2648-51. doi: 10.1093/nar/24.14.2648.
In many organisms (e.g., gram-positive eubacteria) Gin-tRNA is not formed by direct glutaminylation of tRNAGln but by a specific transamidation of Glu-tRNAGln. We wondered whether a similar transamidation pathway also operates in the formation of Asn-tRNA in these organisms. Therefore we tested in S-100 preparations of Lactobacillus bulgaricus, a gram-positive eubacterium, for the conversion by an amidotransferase of [14C]Asp-tRNA to [14C]Asn-tRNA. As no transamidation was observed, we searched for genes for asparaginyl-tRNA synthetase (AsnRS). Two DNA fragments (from different locations of the L.bulgaricus chromosome) were found each containing an ORF whose sequence resembled that of the Escherichia coli asnS gene. The derived amino acid sequences of the two ORFs (432 amino acids) were the same and 41% identical with E.coli AsnRS. When one of the ORFs was expressed in E.coli, it complemented the temperature sensitivity of an E.coli asnS mutant. S-100 preparations of this transformant showed increased charging of unfractionated L.bulgaricus tRNA with asparagine. Deletion of the 3'-terminal region of the L.bulgaricus AsnRS gene led to loss of its complementation and aminoacylation properties. This indicates that L.bulgaricus contains a functional AsnRS. Thus, the transamidation pathway operates only for Gin-tRNAGln formation in this organism, and possibly in all gram-positive eubacteria.
在许多生物体中(如革兰氏阳性真细菌),谷氨酰胺 - tRNA不是通过tRNAGln的直接谷氨酰胺化形成的,而是通过Glu - tRNAGln的特定转酰胺作用形成的。我们想知道在这些生物体中天冬酰胺 - tRNA的形成是否也通过类似的转酰胺途径进行。因此,我们在革兰氏阳性真细菌保加利亚乳杆菌的S - 100提取物中测试了酰胺转移酶将[14C]天冬氨酸 - tRNA转化为[14C]天冬酰胺 - tRNA的能力。由于未观察到转酰胺作用,我们寻找天冬酰胺 - tRNA合成酶(AsnRS)的基因。发现了两个DNA片段(来自保加利亚乳杆菌染色体的不同位置),每个片段都包含一个开放阅读框,其序列与大肠杆菌的asnS基因相似。这两个开放阅读框推导的氨基酸序列(432个氨基酸)相同,并且与大肠杆菌AsnRS有41%的同源性。当其中一个开放阅读框在大肠杆菌中表达时,它弥补了大肠杆菌asnS突变体的温度敏感性。该转化体的S - 100提取物显示,未分级的保加利亚乳杆菌tRNA中天冬酰胺的负载增加。删除保加利亚乳杆菌AsnRS基因的3'末端区域导致其互补和氨酰化特性丧失。这表明保加利亚乳杆菌含有功能性的AsnRS。因此,转酰胺途径仅在该生物体中,可能也在所有革兰氏阳性真细菌中用于谷氨酰胺 - tRNAGln的形成。