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羊毛硫抗生素的蛋白质工程

Protein engineering of lantibiotics.

作者信息

Kuipers O P, Bierbaum G, Ottenwälder B, Dodd H M, Horn N, Metzger J, Kupke T, Gnau V, Bongers R, van den Bogaard P, Kosters H, Rollema H S, de Vos W M, Siezen R J, Jung G, Götz F, Sahl H G, Gasson M J

机构信息

Department of Biophysical Chemistry, Netherlands Institute for Dairy Research.

出版信息

Antonie Van Leeuwenhoek. 1996 Feb;69(2):161-69. doi: 10.1007/BF00399421.

DOI:10.1007/BF00399421
PMID:8775976
Abstract

Whereas protein engineering of enzymes and structural proteins nowadays is an established research tool for studying structure-function relationships of polypeptides and for improving their properties, the engineering of posttranslationally modified peptides, such as the lantibiotics, is just coming of age. The engineering of lantibiotics is less straightforward than that of unmodified proteins, since expression systems should be developed not only for the structural genes but also for the genes encoding the biosynthetic enzymes, immunity protein and regulatory proteins. Moreover, correct posttranslational modification of specific residues could in many cases be a prerequisite for production and secretion of the active lantibiotic, which limits the number of successful mutations one can apply. This paper describes the development of expression systems for the structural lantibiotic genes for nisin A, nisin Z, gallidermin, epidermin and Pep5, and gives examples of recently produced site-directed mutants of these lantibiotics. Characterization of the mutants yielded valuable information on biosynthetic requirements for production. Moreover, regions in the lantibiotics were identified that are of crucial importance for antimicrobial activity. Eventually, this knowledge will lead to the rational design of lantibiotics optimally suited for fighting specific undesirable microorganisms. The mutants are of additional value for studies directed towards the elucidation of the mode of action of lantibiotics.

摘要

如今,酶和结构蛋白的蛋白质工程是研究多肽结构-功能关系以及改善其性质的成熟研究工具,而翻译后修饰肽(如羊毛硫抗生素)的工程才刚刚兴起。羊毛硫抗生素的工程化比未修饰蛋白质的工程化更为复杂,因为不仅要为结构基因开发表达系统,还要为编码生物合成酶、免疫蛋白和调节蛋白的基因开发表达系统。此外,在许多情况下,特定残基的正确翻译后修饰可能是活性羊毛硫抗生素产生和分泌的先决条件,这限制了可应用的成功突变的数量。本文描述了乳酸链球菌素A、乳酸链球菌素Z、加里德明、表皮菌素和Pep5等羊毛硫抗生素结构基因表达系统的开发,并给出了这些羊毛硫抗生素最近产生的定点突变体的实例。对突变体的表征产生了关于生产的生物合成要求的有价值信息。此外,还确定了羊毛硫抗生素中对抗菌活性至关重要的区域。最终,这些知识将导致合理设计出最适合对抗特定有害微生物的羊毛硫抗生素。这些突变体对于旨在阐明羊毛硫抗生素作用方式的研究具有额外价值。

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Protein engineering of lantibiotics.羊毛硫抗生素的蛋白质工程
Antonie Van Leeuwenhoek. 1996 Feb;69(2):161-69. doi: 10.1007/BF00399421.
2
Nisin as a model food preservative.乳酸链球菌素作为一种典型的食品防腐剂。
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Bioengineering of the model lantibiotic nisin.模型羊毛硫抗生素乳链菌肽的生物工程
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Genetics of subtilin and nisin biosyntheses: biosynthesis of lantibiotics.枯草菌素和乳链菌肽生物合成的遗传学:羊毛硫抗生素的生物合成
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[Lantibiotics, a class of ribosomally synthesized peptide antibiotics].[羊毛硫抗生素,一类核糖体合成的肽抗生素]
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Eur J Biochem. 1995 Jun 1;230(2):587-600. doi: 10.1111/j.1432-1033.1995.tb20600.x.
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Increasing the Antimicrobial Activity of Nisin-Based Lantibiotics against Gram-Negative Pathogens.提高基于乳链菌肽的类细菌素对革兰氏阴性病原体的抗菌活性。
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Engineering a disulfide bond and free thiols in the lantibiotic nisin Z.在羊毛硫抗生素乳链菌肽Z中构建二硫键和游离巯基。
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The biosynthesis of the lantibiotics epidermin, gallidermin, Pep5 and epilancin K7.羊毛硫抗生素表皮菌素、加里德菌素、Pep5和表皮兰菌素K7的生物合成。
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Comparison of lantibiotic gene clusters and encoded proteins.羊毛硫抗生素基因簇与编码蛋白的比较。
Antonie Van Leeuwenhoek. 1996 Feb;69(2):171-84. doi: 10.1007/BF00399422.

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Kinetic Analysis of Cyclization by the Substrate-Tolerant Lanthipeptide Synthetase ProcM.底物耐受性羊毛硫肽合成酶ProcM催化环化反应的动力学分析

本文引用的文献

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Characterization of the Lactococcus lactis nisin A operon genes nisP, encoding a subtilisin-like serine protease involved in precursor processing, and nisR, encoding a regulatory protein involved in nisin biosynthesis.乳酸乳球菌乳链菌肽A操纵子基因nisP和nisR的特性研究,nisP编码一种参与前体加工的枯草杆菌蛋白酶样丝氨酸蛋白酶,nisR编码一种参与乳链菌肽生物合成的调节蛋白。
J Bacteriol. 1993 May;175(9):2578-88. doi: 10.1128/jb.175.9.2578-2588.1993.
2
Efficient random mutagenesis method with adjustable mutation frequency by use of PCR and dITP.利用PCR和dITP的具有可调节突变频率的高效随机诱变方法。
Nucleic Acids Res. 1993 Feb 11;21(3):777-8. doi: 10.1093/nar/21.3.777.
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ACS Catal. 2024 Nov 27;14(24):18310-18321. doi: 10.1021/acscatal.4c06216. eCollection 2024 Dec 20.
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Microcin C7 as a Potential Antibacterial-Immunomodulatory Agent in the Postantibiotic Era: Overview of Its Bioactivity Aspects and Applications.微菌素 C7 作为后抗生素时代的一种潜在抗菌-免疫调节药物:其生物活性方面和应用概述。
Int J Mol Sci. 2024 Jun 29;25(13):7213. doi: 10.3390/ijms25137213.
5
Facile Halogenation of Antimicrobial Peptides As Demonstrated by Producing Bromotryptophan-Labeled Nisin Variants with Enhanced Antimicrobial Activity.通过生产具有增强抗菌活性的溴色氨酸标记乳链菌肽变体来展示抗菌肽的简便卤化。
J Nat Prod. 2024 Jun 28;87(6):1548-1555. doi: 10.1021/acs.jnatprod.4c00118. Epub 2024 Jun 18.
6
Kinetic Analysis of Lanthipeptide Cyclization by Substrate-Tolerant ProcM.耐底物ProcM对羊毛硫肽环化的动力学分析
bioRxiv. 2024 May 17:2024.05.16.594612. doi: 10.1101/2024.05.16.594612.
7
Engineering lanthipeptides by introducing a large variety of RiPP modifications to obtain new-to-nature bioactive peptides.通过引入大量的 RiPP 修饰来工程化硫肽,从而获得新的天然生物活性肽。
FEMS Microbiol Rev. 2023 May 19;47(3). doi: 10.1093/femsre/fuad017.
8
Substrate Sequence Controls Regioselectivity of Lanthionine Formation by ProcM.基质序列控制 ProcM 形成羊毛硫氨酸的区域选择性。
J Am Chem Soc. 2021 Nov 10;143(44):18733-18743. doi: 10.1021/jacs.1c09370. Epub 2021 Nov 1.
9
Combating Antimicrobial Resistance With New-To-Nature Lanthipeptides Created by Genetic Code Expansion.利用遗传密码扩展产生的新型天然羊毛硫肽对抗抗菌素耐药性。
Front Microbiol. 2020 Nov 5;11:590522. doi: 10.3389/fmicb.2020.590522. eCollection 2020.
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New developments in RiPP discovery, enzymology and engineering.RiPP 发现、酶学和工程的新进展。
Nat Prod Rep. 2021 Jan 1;38(1):130-239. doi: 10.1039/d0np00027b. Epub 2020 Sep 16.
Properties of nisin Z and distribution of its gene, nisZ, in Lactococcus lactis.
乳酸链球菌素Z的特性及其基因nisZ在乳酸乳球菌中的分布
Appl Environ Microbiol. 1993 Jan;59(1):213-8. doi: 10.1128/aem.59.1.213-218.1993.
4
Biosynthesis and secretion of a precursor of nisin Z by Lactococcus lactis, directed by the leader peptide of the homologous lantibiotic subtilin from Bacillus subtilis.乳酸乳球菌在来自枯草芽孢杆菌的同源羊毛硫抗生素枯草菌素的前导肽的指导下,生物合成并分泌乳酸链球菌素Z的前体。
FEBS Lett. 1993 Sep 6;330(1):23-7. doi: 10.1016/0014-5793(93)80911-d.
5
Characterization of IS905, a new multicopy insertion sequence identified in lactococci.IS905的特性分析,IS905是在乳酸乳球菌中鉴定出的一种新的多拷贝插入序列。
J Bacteriol. 1994 Jun;176(11):3393-6. doi: 10.1128/jb.176.11.3393-3396.1994.
6
Influence of amino acid substitutions in the nisin leader peptide on biosynthesis and secretion of nisin by Lactococcus lactis.乳酸乳球菌中乳链菌肽前导肽氨基酸取代对乳链菌肽生物合成及分泌的影响。
J Biol Chem. 1994 Feb 4;269(5):3555-62.
7
Construction of an expression system for engineering of the lantibiotic Pep5.用于羊毛硫抗生素Pep5工程改造的表达系统的构建
Appl Environ Microbiol. 1994 Dec;60(12):4332-8. doi: 10.1128/aem.60.12.4332-4338.1994.
8
Characterization of the nisin gene cluster nisABTCIPR of Lactococcus lactis. Requirement of expression of the nisA and nisI genes for development of immunity.乳酸乳球菌的乳链菌肽基因簇nisABTCIPR的特性。nisA和nisI基因表达对免疫发展的要求。
Eur J Biochem. 1993 Aug 15;216(1):281-91. doi: 10.1111/j.1432-1033.1993.tb18143.x.
9
Homology modelling of the Lactococcus lactis leader peptidase NisP and its interaction with the precursor of the lantibiotic nisin.乳酸乳球菌前导肽酶NisP的同源建模及其与羊毛硫抗生素乳链菌肽前体的相互作用。
Protein Eng. 1995 Feb;8(2):117-25. doi: 10.1093/protein/8.2.117.
10
Biosynthesis and biological activities of lantibiotics with unique post-translational modifications.具有独特翻译后修饰的羊毛硫抗生素的生物合成及生物活性
Eur J Biochem. 1995 Jun 15;230(3):827-53. doi: 10.1111/j.1432-1033.1995.tb20627.x.