• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

ModelDB:一个用于运行和存储应用于神经科学的计算模型及其结果的环境。

ModelDB: an environment for running and storing computational models and their results applied to neuroscience.

作者信息

Peterson B E, Healy M D, Nadkarni P M, Miller P L, Shepherd G M

机构信息

Yale University School of Medicine, New Haven, CT, USA.

出版信息

J Am Med Inform Assoc. 1996 Nov-Dec;3(6):389-98. doi: 10.1136/jamia.1996.97084512.

DOI:10.1136/jamia.1996.97084512
PMID:8930855
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC116323/
Abstract

Research groups within the Human Brain Project are developing technologies to help organize and make accessible the vast quantities of information being accumulated in the neurosciences. The goal of this work is to provide systems that enable this complex information from many diverse sources to be synthesized into a coherent theory of nervous system function. Our initial approach to this problem has been to create several small databases. While addressing the issues of each individual database, we are also considering how each might be incorporated into an integrated cluster of databases. In this paper, we describe a pilot project in which we construct a database of computational models of neuronal function. This database allows models to be created and run and their results reviewed through a World Wide Web interface. Because models encapsulate knowledge in a formal manner about how neuronal systems function, we also discuss how this database forms a natural center for our initial attempts at creating a cluster of related databases. General issues of database development in the context of the Web are also discussed.

摘要

人类大脑计划中的研究团队正在开发技术,以帮助整理并提供对神经科学领域不断积累的海量信息的访问。这项工作的目标是提供系统,使来自众多不同来源的这些复杂信息能够被综合成一个关于神经系统功能的连贯理论。我们针对这个问题的初步方法是创建几个小型数据库。在处理每个单独数据库的问题时,我们也在考虑如何将每个数据库纳入一个集成的数据库集群。在本文中,我们描述了一个试点项目,在该项目中我们构建了一个神经元功能计算模型数据库。这个数据库允许创建和运行模型,并通过万维网界面查看其结果。由于模型以正式的方式封装了关于神经元系统如何运作的知识,我们还讨论了这个数据库如何成为我们创建相关数据库集群初步尝试的自然核心。同时也讨论了网络环境下数据库开发的一般问题。

相似文献

1
ModelDB: an environment for running and storing computational models and their results applied to neuroscience.ModelDB:一个用于运行和存储应用于神经科学的计算模型及其结果的环境。
J Am Med Inform Assoc. 1996 Nov-Dec;3(6):389-98. doi: 10.1136/jamia.1996.97084512.
2
ModelDB: A Database to Support Computational Neuroscience.ModelDB:一个支持计算神经科学的数据库。
J Comput Neurosci. 2004 Jul-Aug;17(1):7-11. doi: 10.1023/B:JCNS.0000023869.22017.2e.
3
Using web ontology language to integrate heterogeneous databases in the neurosciences.使用网络本体语言整合神经科学中的异构数据库。
AMIA Annu Symp Proc. 2006;2006:464-8.
4
AlzPharm: integration of neurodegeneration data using RDF.阿尔茨海默病药物研发:使用资源描述框架(RDF)整合神经退行性变数据。
BMC Bioinformatics. 2007 May 9;8 Suppl 3(Suppl 3):S4. doi: 10.1186/1471-2105-8-S3-S4.
5
NeuroSys: a semistructured laboratory database.NeuroSys:一个半结构化的实验室数据库。
Neuroinformatics. 2003;1(2):167-76. doi: 10.1007/s12021-003-0003-0.
6
NeuroExtract: facilitating neuroscience-oriented retrieval from broadly-focused bioscience databases using text-based query mediation.神经提取:通过基于文本的查询调解,促进从广泛的生物科学数据库中进行面向神经科学的检索。
J Am Med Inform Assoc. 2007 May-Jun;14(3):355-60. doi: 10.1197/jamia.M2321. Epub 2007 Feb 28.
7
A unified platform to manage, share, and archive morphological and functional data in insect neuroscience.一个用于管理、共享和存档昆虫神经科学形态学和功能数据的统一平台。
Elife. 2021 Aug 24;10:e65376. doi: 10.7554/eLife.65376.
8
Integration of multidisciplinary sensory data: a pilot model of the human brain project approach.多学科感官数据整合:人类大脑计划方法的一个试点模型
J Am Med Inform Assoc. 2001 Jan-Feb;8(1):34-48. doi: 10.1136/jamia.2001.0080034.
9
Internet-based support for bioscience research: a collaborative genome center for human chromosome 12.基于互联网的生物科学研究支持:人类12号染色体协作基因组中心
J Am Med Inform Assoc. 1995 Nov-Dec;2(6):351-64. doi: 10.1136/jamia.1995.96157828.
10
An Internet review: the compleat neuroscientist scours the World Wide Web.网络评论:全才神经科学家搜索万维网。
Science. 1996 Nov 15;274(5290):1104-9. doi: 10.1126/science.274.5290.1104.

引用本文的文献

1
Connectivity concepts in neuronal network modeling.神经元网络建模中的连接性概念。
PLoS Comput Biol. 2022 Sep 8;18(9):e1010086. doi: 10.1371/journal.pcbi.1010086. eCollection 2022 Sep.
2
Tutorial: a computational framework for the design and optimization of peripheral neural interfaces.教程:用于设计和优化周围神经接口的计算框架。
Nat Protoc. 2020 Oct;15(10):3129-3153. doi: 10.1038/s41596-020-0377-6. Epub 2020 Sep 28.
3
Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience.生物医学模拟与神经科学临床应用中的可信度、可重复性和再现性
Front Neuroinform. 2018 Apr 16;12:18. doi: 10.3389/fninf.2018.00018. eCollection 2018.
4
Optimizing computer models of corticospinal neurons to replicate in vitro dynamics.优化皮质脊髓神经元的计算机模型以复制体外动力学。
J Neurophysiol. 2017 Jan 1;117(1):148-162. doi: 10.1152/jn.00570.2016. Epub 2016 Oct 19.
5
Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience.ModelDB的二十年及未来:为神经科学的未来构建重要的建模工具。
J Comput Neurosci. 2017 Feb;42(1):1-10. doi: 10.1007/s10827-016-0623-7. Epub 2016 Sep 15.
6
Is realistic neuronal modeling realistic?现实的神经元建模现实吗?
J Neurophysiol. 2016 Nov 1;116(5):2180-2209. doi: 10.1152/jn.00360.2016. Epub 2016 Aug 17.
7
Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm.迈向感觉运动皮层仿生模型与机械臂之间的实时接口。
Pattern Recognit Lett. 2014 Jan 15;36:204-212. doi: 10.1016/j.patrec.2013.05.019.
8
Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model.神经元钙波传播随内质网参数变化而变化:一个计算机模型
Neural Comput. 2015 Apr;27(4):898-924. doi: 10.1162/NECO_a_00712. Epub 2015 Mar 3.
9
Reinforcement learning of two-joint virtual arm reaching in a computer model of sensorimotor cortex.在感觉运动皮层的计算机模型中,双关节虚拟臂的强化学习。
Neural Comput. 2013 Dec;25(12):3263-93. doi: 10.1162/NECO_a_00521. Epub 2013 Sep 18.
10
Neuroinformatics: from bioinformatics to databasing the brain.神经信息学:从生物信息学到大脑数据库
Bioinform Biol Insights. 2008 May 14;2:253-64. doi: 10.4137/bbi.s540.

本文引用的文献

1
The World Wide Web: a review of an emerging internet-based technology for the distribution of biomedical information.万维网:一种基于互联网的新兴生物医学信息传播技术综述。
J Am Med Inform Assoc. 1996 Jan-Feb;3(1):1-14. doi: 10.1136/jamia.1996.96342645.
2
New solutions for neuroscience communications are still needed.神经科学交流仍需要新的解决方案。
Prog Brain Res. 1994;100:275-81. doi: 10.1016/s0079-6123(08)60795-5.
3
Visual feature integration and the temporal correlation hypothesis.视觉特征整合与时间相关性假说。
Annu Rev Neurosci. 1995;18:555-86. doi: 10.1146/annurev.ne.18.030195.003011.
4
The Human Brain Project: an international resource.人类大脑计划:一项国际资源。
Trends Neurosci. 1993 Nov;16(11):436-8. doi: 10.1016/0166-2236(93)90069-x.
5
Distinguishing theoretical synaptic potentials computed for different soma-dendritic distributions of synaptic input.区分针对突触输入的不同胞体 - 树突分布计算出的理论突触电位。
J Neurophysiol. 1967 Sep;30(5):1138-68. doi: 10.1152/jn.1967.30.5.1138.
6
Theoretical reconstruction of field potentials and dendrodendritic synaptic interactions in olfactory bulb.嗅球中场电位和树突-树突突触相互作用的理论重建
J Neurophysiol. 1968 Nov;31(6):884-915. doi: 10.1152/jn.1968.31.6.884.
7
Signal enhancement in distal cortical dendrites by means of interactions between active dendritic spines.通过活跃树突棘之间的相互作用实现远端皮质树突的信号增强。
Proc Natl Acad Sci U S A. 1985 Apr;82(7):2192-5. doi: 10.1073/pnas.82.7.2192.
8
Logic operations are properties of computer-simulated interactions between excitable dendritic spines.逻辑运算 是 可兴奋树突棘之间计算机模拟相互作用的属性。
Neuroscience. 1987 Apr;21(1):151-65. doi: 10.1016/0306-4522(87)90329-0.
9
A program for simulation of nerve equations with branching geometries.一个用于模拟具有分支几何结构的神经方程的程序。
Int J Biomed Comput. 1989 Mar;24(1):55-68. doi: 10.1016/0020-7101(89)90007-x.
10
Neuron simulations with SABER.使用SABER进行神经元模拟。
J Neurosci Methods. 1990 Aug;33(2-3):135-48. doi: 10.1016/0165-0270(90)90017-a.