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拟南芥4号染色体850 kb区域重复DNA的发生情况及性质分析。

Analysis of the occurrence and nature of repeated DNA in an 850 kb region of Arabidopsis thaliana chromosome 4.

作者信息

Thompson H L, Schmidt R, Dean C

机构信息

John Innes Centre, Norwich, UK.

出版信息

Plant Mol Biol. 1996 Nov;32(3):553-7. doi: 10.1007/BF00019109.

DOI:10.1007/BF00019109
PMID:8980506
Abstract

The occurrence and nature of repeated DNA sequences has been analysed within an 850 kb YAC contig on Arabidopsis thaliana chromosome 4. Hybridization analysis with seven RFLP markers, six cosmid contigs, 29 YAC end probes and eight YAC clones showed that a least 585 kb of the 850 kb contained only low-copy sequences. One YAC end probe, EG15C8LE, hybridized to multiple genomic fragments and contained a sequence with predicted protein homology to cytochrome P450 monooxygenases. Another one, EG11B7RE, was found to be non-contiguous with the other YAC clones and contained a dispersed repetitive sequence associated with centromeric regions.

摘要

对拟南芥4号染色体上一个850kb的酵母人工染色体(YAC)重叠群中的重复DNA序列的出现情况和性质进行了分析。用7个限制性片段长度多态性(RFLP)标记、6个黏粒重叠群、29个YAC末端探针和8个YAC克隆进行杂交分析,结果表明,在850kb中至少有585kb只包含低拷贝序列。一个YAC末端探针EG15C8LE与多个基因组片段杂交,并包含一个与细胞色素P450单加氧酶具有预测蛋白质同源性的序列。另一个探针EG11B7RE被发现与其他YAC克隆不连续,并包含一个与着丝粒区域相关的分散重复序列。

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引用本文的文献

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本文引用的文献

1
A physical map of chromosome 2 of Arabidopsis thaliana.拟南芥2号染色体的物理图谱。
Genome Res. 1996 Jan;6(1):19-25. doi: 10.1101/gr.6.1.19.
2
The CIC library: a large insert YAC library for genome mapping in Arabidopsis thaliana.CIC文库:用于拟南芥基因组图谱绘制的大型插入片段酵母人工染色体文库。
Plant J. 1995 Nov;8(5):763-70. doi: 10.1046/j.1365-313x.1995.08050763.x.
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Analysis of clones carrying repeated DNA sequences in two YAC libraries of Arabidopsis thaliana DNA.对拟南芥DNA的两个酵母人工染色体文库中携带重复DNA序列的克隆的分析。
Plant J. 1994 May;5(5):735-44. doi: 10.1111/j.1365-313x.1994.00735.x.
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Physical map and organization of Arabidopsis thaliana chromosome 4.拟南芥4号染色体的物理图谱与组织结构
Science. 1995 Oct 20;270(5235):480-3. doi: 10.1126/science.270.5235.480.
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Characterization of the genome of Arabidopsis thaliana.拟南芥基因组的特征分析。
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Isolation of single-copy-sequence clones from a yeast artificial chromosome library of randomly-sheared Arabidopsis thaliana DNA.从随机剪切的拟南芥DNA酵母人工染色体文库中分离单拷贝序列克隆。
Plant Mol Biol. 1990 Apr;14(4):561-8. doi: 10.1007/BF00027501.
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Construction and characterization of a yeast artificial chromosome library of Arabidopsis which is suitable for chromosome walking.一个适用于染色体步移的拟南芥酵母人工染色体文库的构建与表征。
Mol Gen Genet. 1991 May;226(3):484-90. doi: 10.1007/BF00260662.
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PFGE-resolved RFLP analysis and long range restriction mapping of the DNA of Arabidopsis thaliana using whole YAC clones as probes.利用完整的酵母人工染色体(YAC)克隆作为探针,对拟南芥DNA进行脉冲场凝胶电泳(PFGE)解析的限制性片段长度多态性(RFLP)分析和长距离限制性图谱绘制。
Nucleic Acids Res. 1992 Dec 11;20(23):6201-7. doi: 10.1093/nar/20.23.6201.
9
Sequence and organization of 5S ribosomal RNA-encoding genes of Arabidopsis thaliana.拟南芥5S核糖体RNA编码基因的序列与组织
Gene. 1992 Mar 15;112(2):225-8. doi: 10.1016/0378-1119(92)90380-8.