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基于secY基因系统发育推断的质体sec装置进化模型。

A model for the evolution of the plastid sec apparatus inferred from secY gene phylogeny.

作者信息

Vogel H, Fischer S, Valentin K

机构信息

Institute for Plant Physiology, Justus-Liebig University, Giessen, Germany.

出版信息

Plant Mol Biol. 1996 Nov;32(4):685-92. doi: 10.1007/BF00020209.

DOI:10.1007/BF00020209
PMID:8980520
Abstract

Plastids possess a bacteria-like sec apparatus that is involved in protein import into the thylakoid lumen. We have analyzed one of the genes essential for this process, secY. A secY gene from the unicellular red alga Cyanidium caldarium was found to be transcriptionally active, demonstrating for the first time that secY is functional in a plastid. Unlike the situation seen in bacteria the C. caldarium gene is transcribed monocistronically, despite the fact that it is part of a large ribosomal gene cluster that resembles bacterial spc operons. A molecular phylogeny is presented for 8 plastid-encoded secY genes, four of which have not been published yet. In this analysis plastid secY genes fall into two classes. One of these, comprising of genes from multicellular red algae and Cryptophyta, clusters in a neighbour-joining tree with a cyanobacterial counterpart. Separated from the aforesaid are secY genes from Chromophyta, Glaucocystophyta and a unicellular red alga. All plastid and cyanobacterial sequences are located on the same branch, separated from bacterial homologues. We postulate that the two classes of secY genes are paralogous, i.e. their gene products are involved in different protein translocation processes. Based on this assumption a model for the evolution of the plastid sec apparatus is presented.

摘要

质体拥有一种类似于细菌的Sec转运系统,该系统参与蛋白质导入类囊体腔。我们分析了这一过程中必需的一个基因,即secY。发现单细胞红藻嗜热蓝纤维藻的一个secY基因具有转录活性,首次证明secY在质体中发挥功能。与细菌不同的是,嗜热蓝纤维藻基因以单顺反子形式转录,尽管它是一个类似于细菌spc操纵子的大型核糖体基因簇的一部分。本文给出了8个质体编码的secY基因的分子系统发育树,其中4个基因尚未发表。在该分析中,质体secY基因分为两类。其中一类由多细胞红藻和隐藻的基因组成,在邻接树中与一个蓝细菌对应基因聚类在一起。与上述基因分开的是来自褐藻、灰胞藻和一种单细胞红藻的secY基因。所有质体和蓝细菌序列位于同一分支上,与细菌同源物分开。我们推测这两类secY基因是旁系同源的,即它们的基因产物参与不同的蛋白质转运过程。基于这一假设,本文提出了质体Sec转运系统的进化模型。

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A model for the evolution of the plastid sec apparatus inferred from secY gene phylogeny.基于secY基因系统发育推断的质体sec装置进化模型。
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引用本文的文献

1
A SecY homologue is required for the elaboration of the chloroplast thylakoid membrane and for normal chloroplast gene expression.一个SecY同源物对于叶绿体类囊体膜的形成以及正常的叶绿体基因表达是必需的。
J Cell Biol. 1998 Apr 20;141(2):385-95. doi: 10.1083/jcb.141.2.385.

本文引用的文献

1
Studies with Cyanidium caldarium, an anomalously pigmented chlorophyte.对嗜热蓝藻,一种色素异常的绿藻进行的研究。
Arch Mikrobiol. 1959;32(3):270-7. doi: 10.1007/BF00409348.
2
A High-Resolution Gene Map of the Chloroplast Genome of the Red Alga Porphyra purpurea.紫紫菜叶绿体基因组的高分辨率基因图谱
Plant Cell. 1993 Apr;5(4):465-475. doi: 10.1105/tpc.5.4.465.
3
SecY, an integral subunit of the bacterial preprotein translocase, is encoded by a plastid genome.SecY是细菌前体蛋白转位酶的一个整合亚基,由质体基因组编码。
J Biol Chem. 1993 Apr 5;268(10):7514-9.
4
SecA is plastid-encoded in a red alga: implications for the evolution of plastid genomes and the thylakoid protein import apparatus.SecA在一种红藻中由质体编码:对质体基因组和类囊体蛋白导入装置进化的启示。
Mol Gen Genet. 1993 Jan;236(2-3):245-50. doi: 10.1007/BF00277119.
5
Identification of the SecA protein homolog in pea chloroplasts and its possible involvement in thylakoidal protein transport.豌豆叶绿体中SecA蛋白同源物的鉴定及其在类囊体蛋白转运中的可能作用。
J Biol Chem. 1994 Dec 16;269(50):31338-41.
6
SecA homolog in protein transport within chloroplasts: evidence for endosymbiont-derived sorting.
Science. 1994 Nov 4;266(5186):796-8. doi: 10.1126/science.7973633.
7
The SecY protein family: comparative analysis and phylogenetic relationships.SecY蛋白家族:比较分析与系统发育关系
Mol Phylogenet Evol. 1994 Sep;3(3):187-91. doi: 10.1006/mpev.1994.1021.
8
Isolation and characterization of a cDNA encoding the SecA protein from spinach chloroplasts. Evidence for azide resistance of Sec-dependent protein translocation across thylakoid membranes in spinach.菠菜叶绿体中编码SecA蛋白的cDNA的分离与鉴定。菠菜中Sec依赖性蛋白质跨类囊体膜转运对叠氮化物抗性的证据。
J Biol Chem. 1995 Aug 4;270(31):18341-6. doi: 10.1074/jbc.270.31.18341.
9
A SecY homolog in Arabidopsis thaliana. Sequence of a full-length cDNA clone and import of the precursor protein into chloroplasts.拟南芥中的一种SecY同源物。全长cDNA克隆的序列以及前体蛋白导入叶绿体的过程。
J Biol Chem. 1995 Jul 28;270(30):17664-7. doi: 10.1074/jbc.270.30.17664.
10
The spc ribosomal protein operon of Escherichia coli: sequence and cotranscription of the ribosomal protein genes and a protein export gene.大肠杆菌的spc核糖体蛋白操纵子:核糖体蛋白基因和一个蛋白质输出基因的序列及共转录
Nucleic Acids Res. 1983 May 11;11(9):2599-616. doi: 10.1093/nar/11.9.2599.