• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用寡脱氧核苷酸阵列通过杂交对肠出血性大肠杆菌分离株进行核酸扫描。

Nucleic acid scanning-by-hybridization of enterohemorrhagic Escherichia coli isolates using oligodeoxynucleotide arrays.

作者信息

Salazar N M, Caetano-Anollés G

机构信息

Digital Diagnostica S.R.L., Maldonado, Uruguay.

出版信息

Nucleic Acids Res. 1996 Dec 15;24(24):5056-7. doi: 10.1093/nar/24.24.5056.

DOI:10.1093/nar/24.24.5056
PMID:9016682
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC146331/
Abstract

Nucleic acid scanning by hybridization (NASBH) is a non-electrophoretic typing strategy that uses gridded oligonucleotides to reproducibly characterize arbitrarily amplified nucleic acid sequences. Membrane-bound arrays of terminally-degenerate oligonucleotides were hybridized to DNA amplification fingerprinting (DAF) products from enterohemorrhagic Escherichia coli O157:H7 isolates. Numerical and cluster analysis of 64 isolates, selected by DAF to represent a single dominant amplification type identified 14 hybridization types. Results show that NASBH is a powerful alternative for the identification of closely related bacteria, can be used successfully in epidemiological studies, and holds potential in general nucleic acid diagnostics.

摘要

通过杂交进行核酸扫描(NASBH)是一种非电泳分型策略,它使用网格化寡核苷酸来可重复地表征任意扩增的核酸序列。将末端简并寡核苷酸的膜结合阵列与来自肠出血性大肠杆菌O157:H7分离株的DNA扩增指纹图谱(DAF)产物进行杂交。通过DAF选择的64株代表单一优势扩增类型的分离株,经数值和聚类分析确定了14种杂交类型。结果表明,NASBH是鉴定密切相关细菌的有力替代方法,可成功用于流行病学研究,并且在一般核酸诊断中具有潜力。

相似文献

1
Nucleic acid scanning-by-hybridization of enterohemorrhagic Escherichia coli isolates using oligodeoxynucleotide arrays.使用寡脱氧核苷酸阵列通过杂交对肠出血性大肠杆菌分离株进行核酸扫描。
Nucleic Acids Res. 1996 Dec 15;24(24):5056-7. doi: 10.1093/nar/24.24.5056.
2
[Diversity of DNA sequences among enterohemorrhagic Escherichia coli O157:H7 detected by PCR-based DNA fingerprinting].[基于聚合酶链反应的DNA指纹图谱检测肠出血性大肠杆菌O157:H7的DNA序列多样性]
Nihon Rinsho. 1997 Mar;55(3):671-4.
3
Presence and characterization of a mosaic genomic island which distinguishes sorbitol-fermenting enterohemorrhagic Escherichia coli O157:H- from E. coli O157:H7.区分山梨醇发酵肠出血性大肠杆菌O157:H-与大肠杆菌O157:H7的嵌合基因组岛的存在及特征
Appl Environ Microbiol. 2005 Aug;71(8):4875-8. doi: 10.1128/AEM.71.8.4875-4878.2005.
4
Identification of Escherichia coli O157:H7 genomic regions conserved in strains with a genotype associated with human infection.鉴定与人类感染相关基因型菌株中保守的大肠杆菌O157:H7基因组区域。
Appl Environ Microbiol. 2007 Jan;73(1):22-31. doi: 10.1128/AEM.00982-06. Epub 2006 Oct 20.
5
Genetic relatedness of a non-motile variant O157 enteropathogenic Escherichia coli (EPEC) strain and E. coli strains belonging to pathogenic related groups.一株非运动性O157肠致病性大肠杆菌(EPEC)菌株与属于致病相关菌群的大肠杆菌菌株的遗传相关性。
Microbiol Res. 2008;163(2):225-33. doi: 10.1016/j.micres.2006.05.008. Epub 2006 Jul 3.
6
Identification and distribution of the enterohemorrhagic Escherichia coli factor for adherence (efa1) gene in sorbitol-fermenting Escherichia coli O157: H-.产志贺毒素大肠杆菌黏附因子(efa1)基因在发酵山梨醇的大肠杆菌O157:H-中的鉴定与分布。
Int J Med Microbiol. 2002 Sep;292(3-4):207-14. doi: 10.1078/1438-4221-00206.
7
Serotypes and virulence markers of Shiga toxin-producing Escherichia coli (STEC) isolated from dairy cattle in São Paulo State, Brazil.从巴西圣保罗州奶牛中分离出的产志贺毒素大肠杆菌(STEC)的血清型和毒力标记物。
Vet Microbiol. 2005 Jan 5;105(1):29-36. doi: 10.1016/j.vetmic.2004.08.007. Epub 2004 Dec 10.
8
Applicability of DiversiLab repetitive sequence-based PCR method in epidemiological typing of enterohemorrhagic Escherichia coli (EHEC).基于重复序列的 DiversiLab PCR 方法在肠出血性大肠杆菌(EHEC)流行病学分型中的适用性。
Foodborne Pathog Dis. 2013 Jul;10(7):632-8. doi: 10.1089/fpd.2012.1411. Epub 2013 May 21.
9
Comparison of traditional and molecular typing methods of Escherichia coli O157.大肠杆菌O157传统分型方法与分子分型方法的比较
Acta Microbiol Immunol Hung. 2003;50(4):349-67. doi: 10.1556/AMicr.50.2003.4.4.
10
Identification of Escherichia coli O157:H7 and other enterohemorrhagic serotypes by EHEC- hlyA targeting, strand displacement amplification, and fluorescence polarization.通过靶向肠出血性大肠杆菌溶血素A(EHEC-hlyA)、链置换扩增和荧光偏振鉴定大肠杆菌O157:H7及其他肠出血性血清型。
Mol Cell Probes. 2002 Apr;16(2):85-92. doi: 10.1006/mcpr.2001.0389.

引用本文的文献

1
Designing a new biosensor "DNA ELISA" to detect Escherichia coli using genomic DNA and comparison of this method to PCR-ELISA.设计一种使用基因组DNA检测大肠杆菌的新型生物传感器“DNA ELISA”,并将该方法与PCR-ELISA进行比较。
J Enzyme Inhib Med Chem. 2018 Dec;33(1):722-725. doi: 10.1080/14756366.2018.1450748.
2
Quantitative oligonucleotide microarray fingerprinting of Salmonella enterica isolates.肠炎沙门氏菌分离株的定量寡核苷酸微阵列指纹分析
Nucleic Acids Res. 2004 Mar 22;32(5):1848-56. doi: 10.1093/nar/gkh329. Print 2004.
3
Evaluation of pulsed-field gel electrophoresis as a tool for determining the degree of genetic relatedness between strains of Escherichia coli O157:H7.评估脉冲场凝胶电泳作为确定大肠杆菌O157:H7菌株间遗传相关性程度的工具。
J Clin Microbiol. 2003 May;41(5):1843-9. doi: 10.1128/JCM.41.5.1843-1849.2003.
4
Fingerprinting closely related xanthomonas pathovars with random nonamer oligonucleotide microarrays.使用随机九聚体寡核苷酸微阵列对密切相关的黄单胞菌致病型进行指纹识别。
Appl Environ Microbiol. 2002 Dec;68(12):6361-70. doi: 10.1128/AEM.68.12.6361-6370.2002.

本文引用的文献

1
DNA chips: analysing sequence by hybridization to oligonucleotides on a large scale.DNA芯片:通过与寡核苷酸大规模杂交来分析序列。
Trends Genet. 1996 Mar;12(3):110-5. doi: 10.1016/0168-9525(96)81422-3.
2
Molecular epidemiology of Escherichia coli O157:H7 by pulsed-field gel electrophoresis and comparison with that by bacteriophage typing.采用脉冲场凝胶电泳技术对大肠杆菌O157:H7进行分子流行病学研究,并与噬菌体分型技术的研究结果进行比较。
J Clin Microbiol. 1996 Apr;34(4):959-61. doi: 10.1128/jcm.34.4.959-961.1996.
3
RAPD (arbitrary primer) PCR is more sensitive than multilocus enzyme electrophoresis for distinguishing related bacterial strains.随机扩增多态性DNA(任意引物)聚合酶链反应在区分相关细菌菌株方面比多位点酶电泳更为灵敏。
Nucleic Acids Res. 1993 Dec 25;21(25):5930-3. doi: 10.1093/nar/21.25.5930.
4
Amplifying DNA with arbitrary oligonucleotide primers.用任意寡核苷酸引物扩增DNA。
PCR Methods Appl. 1993 Oct;3(2):85-94. doi: 10.1101/gr.3.2.85.
5
Hybridisation techniques on gridded high density DNA and in situ colony filters based on fluorescence detection.基于荧光检测的网格状高密度DNA和原位菌落滤膜杂交技术。
Nucleic Acids Res. 1994 Aug 25;22(16):3423-4. doi: 10.1093/nar/22.16.3423.
6
MAAP: a versatile and universal tool for genome analysis.MAAP:一种用于基因组分析的多功能通用工具。
Plant Mol Biol. 1994 Sep;25(6):1011-26. doi: 10.1007/BF00014674.
7
Oligonucleotide arrays: new concepts and possibilities.寡核苷酸阵列:新概念与新可能。
Biotechnology (N Y). 1994 Nov;12(11):1093-9. doi: 10.1038/nbt1194-1093.
8
Advances in genosensor research.基因传感器研究进展。
Clin Chem. 1995 May;41(5):700-6.
9
Clonal relationships among Escherichia coli strains that cause hemorrhagic colitis and infantile diarrhea.引起出血性结肠炎和婴儿腹泻的大肠杆菌菌株之间的克隆关系。
Infect Immun. 1993 May;61(5):1619-29. doi: 10.1128/iai.61.5.1619-1629.1993.
10
Hemorrhagic colitis associated with a rare Escherichia coli serotype.与一种罕见大肠杆菌血清型相关的出血性结肠炎。
N Engl J Med. 1983 Mar 24;308(12):681-5. doi: 10.1056/NEJM198303243081203.