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白蛋白结合GA模块的溶液结构:一种多功能细菌蛋白结构域

Solution structure of the albumin-binding GA module: a versatile bacterial protein domain.

作者信息

Johansson M U, de Château M, Wikström M, Forsén S, Drakenberg T, Björck L

机构信息

Department of Physical Chemistry, Lund University, Sweden.

出版信息

J Mol Biol. 1997 Mar 14;266(5):859-65. doi: 10.1006/jmbi.1996.0856.

Abstract

The albumin-binding GA module is found in a family of surface proteins of different bacterial species. It comprises 45 amino acid residues and represents the first known example of contemporary module shuffling. Using 1H NMR spectroscopy we have determined the solution structure of the GA module from protein PAB, a protein of the anaerobic human commensal and pathogen Peptostreptococcus magnus. This structure, the first three-dimensional structure of an albumin-binding protein domain described, was shown to be composed of a left-handed three-helix-bundle. Sequence differences between GA modules with different affinities for albumin indicated that a conserved region in the C-terminal part of the second helix and the flexible sequence between helices 2 and 3 could contribute to the albumin-binding activity. The effect on backbone amide proton exchange rates upon binding to albumin support this assumption. The GA module has a fold that is strikingly similar to the immunoglobulin-binding domains of staphylococcal protein A but it shows no resemblance to the fold shared by the immunoglobulin-binding domains of streptococcal protein G and peptostreptococcal protein L. When the gene sequences, binding properties and thermal stability of these four domains are analysed in relation to their global folds an evolutionary pattern emerges. Thus, in the evolution of novel binding properties mutations are allowed only as long as the energetically favourable global fold is maintained.

摘要

白蛋白结合GA模块存在于不同细菌物种的一类表面蛋白中。它由45个氨基酸残基组成,是当代模块改组的首个已知实例。我们利用核磁共振氢谱确定了来自蛋白PAB的GA模块的溶液结构,PAB是人类厌氧共生菌和病原体大消化链球菌的一种蛋白。该结构是所描述的首个白蛋白结合蛋白结构域的三维结构,显示为由左手三螺旋束组成。对白蛋白具有不同亲和力的GA模块之间的序列差异表明,第二螺旋C端部分的保守区域以及螺旋2和螺旋3之间的柔性序列可能有助于白蛋白结合活性。与白蛋白结合后对主链酰胺质子交换速率的影响支持了这一假设。GA模块的折叠与葡萄球菌蛋白A的免疫球蛋白结合结构域惊人地相似,但与链球菌蛋白G和消化链球菌蛋白L的免疫球蛋白结合结构域共有的折叠没有相似之处。当分析这四个结构域的基因序列、结合特性和热稳定性与其整体折叠的关系时,一种进化模式就出现了。因此,在新结合特性的进化过程中,只有在保持能量上有利的整体折叠的情况下才允许发生突变。

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