Dalal S, Balasubramanian S, Regan L
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA.
Nat Struct Biol. 1997 Jul;4(7):548-52. doi: 10.1038/nsb0797-548.
For most proteins the amino acid sequence determines the tertiary structure. The relative importance of the individual amino acids in specifying the fold, however, remains unclear. To highlight this, Creamer and Rose put forth the 'Paracelsus challenge': Design a protein with 50% sequence identity to a protein with a different fold. We have met this challenge by designing a sequence which retains 50% identity to a predominantly beta-sheet protein, but which now adopts a four helix bundle conformation and possesses the attributes of a native protein. Our results emphasize that a subset of the amino acid sequence is sufficient to specify a fold, and have implications both for structure prediction and design.
对于大多数蛋白质而言,氨基酸序列决定其三级结构。然而,单个氨基酸在确定折叠结构方面的相对重要性仍不明确。为突出这一点,克里默和罗斯提出了“帕拉塞尔苏斯挑战”:设计一种与具有不同折叠结构的蛋白质有50%序列同一性的蛋白质。我们通过设计一种序列应对了这一挑战,该序列与一种主要为β折叠的蛋白质保持50%的同一性,但现在采用四螺旋束构象并具备天然蛋白质的特性。我们的结果强调,氨基酸序列的一个子集足以确定一种折叠结构,并且对结构预测和设计都有影响。