Dumolin-Lapègue S, Demesure B, Fineschi S, Le Corre V, Petit R J
Institute National de la Recherche Agronomique, Laboratoire de Génétique et d'Amélioration des Arbres Forestiers, Gazinet, France.
Genetics. 1997 Aug;146(4):1475-87. doi: 10.1093/genetics/146.4.1475.
Patterns of chloroplast DNA (cpDNA) variation were studied in eight white oak species by sampling 345 populations throughout Europe. The detection of polymorphisms by restriction analysis of PCR-amplified cpDNA fragments allowed the identification of 23 haplotypes that were phylogenetically ordered. A systematic hybridization and introgression between the eight species studied is evident. The levels of subdivision for unordered (GST) and ordered (NST) alleles are very high and close (0.83 and 0.85). A new statistical approach to the quantitative study of phylogeography is presented, which relies on the coefficients of differentiation GST and NST and the Mantel's test. Based on pairwise comparisons between populations, the significance of the difference between both coefficients is evaluated at a global and a local scale. The mapped distribution of the haplotypes indicates the probable routes of postglacial recolonization followed by oak populations that had persisted in southern refugia, especially in the Iberian peninsula, Italy and the Balkans. Most cpDNA polymorphisms appear to be anterior to the beginning of the last recolonization. A subset of the preexisting haplotypes have merely expanded north, while others were left behind in the south.
通过对欧洲各地345个种群进行采样,研究了8种白栎叶绿体DNA(cpDNA)的变异模式。通过对PCR扩增的cpDNA片段进行限制性分析来检测多态性,从而鉴定出23种系统发育有序的单倍型。所研究的8个物种之间存在明显的系统杂交和基因渗入现象。无序等位基因(GST)和有序等位基因(NST)的细分水平非常高且相近(分别为0.83和0.85)。本文提出了一种用于系统地理学定量研究的新统计方法,该方法依赖于分化系数GST和NST以及Mantel检验。基于种群间的成对比较,在全球和局部尺度上评估了这两个系数之间差异的显著性。单倍型的分布图显示了在南部避难所(特别是伊比利亚半岛、意大利和巴尔干半岛)持续存在的栎树种群在冰期后重新定殖的可能路线。大多数cpDNA多态性似乎早于最后一次重新定殖开始之前就已存在。一部分先前存在的单倍型仅向北扩张,而其他单倍型则留在了南方。