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DNA链的柔韧性与染色质核小体的结构

DNA chain flexibility and the structure of chromatin nu-bodies.

作者信息

Harrington R E

出版信息

Nucleic Acids Res. 1977 Oct;4(10):3519-35. doi: 10.1093/nar/4.10.3519.

DOI:10.1093/nar/4.10.3519
PMID:928067
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC342669/
Abstract

The persistence length of high-molecular-weight, monodisperse-bihelical DNA has been evaluated from low-shear flow birefingence and viscosity data at several temperatures in 2.0 M Nacl neutral pH buffer. At these solvent conditions, both the DNA and histone components of chromatin nu-bodies have structural features similar to those in the intact nucleohistone complex at low ionic strength. The theory of Landau and Lifshitz is used to relate the experimental result to the thermodynamic functions for bending 140 nucleotide pairs of DNA into a plausible model structure: per nu-body, delta Gb=43.8 +/- 5.3 kcal/mole, delta Hb= 45.7 +/- 3.7 kcal/mole, and delta Sb = 6.2 +/- 12.4 entropy units. This bending free energy is comparable to or less than that estimated to be required for a kinked DNA configuration and appears to be well within the range of estimated electrostatic free energies available from DNA-histone interactions in a nu-body assembly.

摘要

在2.0M氯化钠中性pH缓冲液中,于几个温度下,通过低剪切流双折射和粘度数据评估了高分子量、单分散双螺旋DNA的持续长度。在这些溶剂条件下,染色质核小体的DNA和组蛋白成分都具有与低离子强度下完整核组蛋白复合物相似的结构特征。利用朗道和利夫希茨理论将实验结果与将140个核苷酸对的DNA弯曲成合理模型结构的热力学函数相关联:每个核小体,ΔGb = 43.8±5.3千卡/摩尔,ΔHb = 45.7±3.7千卡/摩尔,以及ΔSb = 6.2±12.4熵单位。这种弯曲自由能与估计的扭结DNA构型所需的自由能相当或更低,并且似乎完全在核小体组装中DNA-组蛋白相互作用可获得的估计静电自由能范围内。

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1
DNA chain flexibility and the structure of chromatin nu-bodies.DNA链的柔韧性与染色质核小体的结构
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Physical properties of DNA and chromatin isolated from G1- and S-phase HeLa S-3 cells. Effects of histone H1 phosphorylation and stage-specific nonhistone chromosomal proteins on the molar ellipticity of native and reconstituted nucleoproteins during thermal denaturation.从G1期和S期海拉S-3细胞中分离出的DNA和染色质的物理性质。组蛋白H1磷酸化和阶段特异性非组蛋白染色体蛋白对热变性过程中天然和重组核蛋白摩尔椭圆率的影响。
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[Investigation of DNA complexes with histones F3 and F3+F2a2].[组蛋白F3和F3+F2a2与DNA复合物的研究]
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A contribution of nonhistone proteins to the conformation of chromatin.非组蛋白对染色质构象的作用。
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Studies on chromatin. V. A model for the structure of chromatin subunit.染色质研究。V. 染色质亚基结构模型
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Histone-DNA interactions in erythrocyte chromatin.红细胞染色质中的组蛋白 - DNA 相互作用。
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[Structure of chromosomal deoxyribonucleoproteins. VII. Free dna in preparation of fragmented chromatin].[染色体脱氧核糖核蛋白的结构。VII. 片段化染色质制备中的游离DNA]
Mol Biol (Mosk). 1976 Jan-Feb;10(1):35-54.

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Strained DNA is kinked by low concentrations of Zn2+.低浓度的Zn2+会使受张力的DNA发生扭结。
Proc Natl Acad Sci U S A. 1997 Sep 30;94(20):10565-70. doi: 10.1073/pnas.94.20.10565.
3
Histone packing in the nucleosome core particle of chromatin.染色质核小体核心颗粒中的组蛋白包装。
Proc Natl Acad Sci U S A. 1978 Aug;75(8):3649-53. doi: 10.1073/pnas.75.8.3649.

本文引用的文献

1
The molecular configuration of deoxyribonucleic acid. III. X-ray diffraction study of the C form of the lithium salt.脱氧核糖核酸的分子构型。III. 锂盐C型的X射线衍射研究。
J Mol Biol. 1961 Oct;3:547-65. doi: 10.1016/s0022-2836(61)80021-1.
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Degradation of deoxyribonucleic acid under hydrodynamic shearing forces.在流体动力学剪切力作用下脱氧核糖核酸的降解
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Structure of T-2 bacteriophage.T-2噬菌体的结构。
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The molecular weights of T2 bacteriophage DNA and its first and second breakage products.T2噬菌体DNA及其一级和二级断裂产物的分子量。
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The structural unity of the DNA of T2 bacteriophage.T2噬菌体DNA的结构统一性
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A model for particulate structure in chromatin.染色质中颗粒结构的模型。
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Structure of nucleohistone. I. Hydrodynamic behaviour.核组蛋白的结构。I. 流体动力学行为。
Biochim Biophys Acta. 1966 Jul 20;123(1):76-83.
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Electro-optical properties of nucleic acids and nucleoproteins. I. Study of the gel-forming deoxyribonucleohistone.核酸与核蛋白的电光性质。I. 凝胶状脱氧核糖核组蛋白的研究。
Biochim Biophys Acta. 1966 May 12;120(1):113-30. doi: 10.1016/0926-6585(66)90283-4.
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Conformation studies on the sodium and cesium salts of calf thymus deoxyribonucleic acid (DNA).小牛胸腺脱氧核糖核酸(DNA)钠盐和铯盐的构象研究。
Biopolymers. 1966 Apr-May;4(4):429-40. doi: 10.1002/bip.1966.360040404.
10
The evaluation of standard sedimentation coefficients of sodium RNA and sodium DNA from sedimentation velocity data in concentrated NaCl and CsCl solutions.根据浓氯化钠和氯化铯溶液中的沉降速度数据评估核糖核酸钠和脱氧核糖核酸钠的标准沉降系数。
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